Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02530 ATGGAAAACCACATCTACGCCTCCTCTTACAGCCCTTCCACCAACTACAGATCATTCCGAGACTCCTCCGACGCCGCCACCACCACCATGTTCCTCTCTCACCACCACCACCGCACCGACTCCGCCGCCGCCCTCCGCTTCCCCTCCGCCGACGACATTGCCCCGCCCGGCGTCACCTCCCGAATCGCCTCTTCCGCCGCCGCCGCCGCCAATTTCCTCTCTCCCTGGCCCGCCGCAACCGCGCCCTCCGCCCTTGACCTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACCCACTGGCCAAGCGCCCTAGATTTGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCACCCGAGAGACCAGGGGAGCCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAAAATGTAAATATGGTGCTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGATGACTTGAGTCATACTGTTGCACAGACACAAACAAATTCTATGGTGGGAGGGGCAACAGGAGATATACAGGCAATTAAGTCTCTTATATCTCCATCATTGCAGAATAGCAAAGGGCTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCCGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGCCCTTCTATTTTGCCATCCTCAGCTGCTAATCTGAATATTGGACTTCTTAATCCAGCTGTATCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCGATGTCTCAAGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGACAGATTGAATGCGATTTTTATATGAAAACTGGCGAGTGTAAATTCGGGGAAAGATGCAAGTACCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAGCAGGCTACTGTTAAACTCACTCCTGCAGGTTTACCGAGAAGAGAGGGTGCTGCTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACCAGTGGAGGGGAAGCAGAAGGCGATGATGAAAAGGAGACTTCTGCTCCGGAACAGCATTGA 1500 0.4893 MENHIYASSYSPSTNYRSFRDSSDAATTTMFLSHHHHRTDSAAALRFPSADDIAPPGVTSRIASSAAAAANFLSPWPAATAPSALDLKRSSDALYHPTILGTIGQSEAWYSTNPLAKRPRFESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCAFYMKTGKCKYGAACKFHHPKDIQIQLSDDLSHTVAQTQTNSMVGGATGDIQAIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGPSILPSSAANLNIGLLNPAVSVYQAFDPRLSNPMSQVGIAETIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQATVKLTPAGLPRREGAAICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSGGEAEGDDEKETSAPEQH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 440 468 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 330 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 159 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 444 467 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 416 IPR000571 GO:0046872
Pumo10g02530 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 254 IPR000571 GO:0046872
Pumo10g02530 499 Gene3D - 225 340 - -
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 231 255 IPR036855 GO:0046872
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 444 467 IPR036855 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 390 417 IPR000571 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Pumo10g02530 499 SMART c3hfinal6 440 467 IPR000571 GO:0046872
Pumo10g02530 499 PANTHER PROTEIN PHOSPHATASE RELATED 116 275 - -
Pumo10g02530 499 Gene3D - 171 218 - -
Pumo10g02530 499 Gene3D - 93 170 - -
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 133 160 IPR036855 GO:0046872
Pumo10g02530 499 MobiDBLite consensus disorder prediction 483 499 - -
Pumo10g02530 499 FunFam Zinc finger CCCH domain-containing protein 37 171 218 - -
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 392 418 IPR036855 GO:0046872
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 190 211 IPR036855 GO:0046872
Pumo10g02530 499 MobiDBLite consensus disorder prediction 467 499 - -
Pumo10g02530 499 SUPERFAMILY CCCH zinc finger 308 331 IPR036855 GO:0046872
Pumo10g02530 499 FunFam Zinc finger CCCH domain-containing protein 37 92 170 - -
Pumo10g02530 499 Gene3D - 388 482 - -
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Pumo10g02530 499 ProSiteProfiles Zinc finger C3H1-type profile. 390 418 IPR000571 GO:0046872
Pumo10g02530 499 FunFam zinc finger CCCH domain-containing protein 37 388 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02530 Pumo-Chr10 43399396 43406962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02530 289 479 C2H2 Transcription Factor Family AT3G02830 34.375 5.31e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo10g02530 zf-CCCH 1.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02530 - - gmx:100801417 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02530 10 43399396 43406962 Pumo10g02530 10 43399396 43406962 ECH