Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02492 ATGCCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATAATATTATTCATTTTCCCATTAAGCCAGCCACTCACTTCACAGATTTACACTCTTTGACTCAGATTCAGCCTCTGCCTCAACCCATCATCATCATGAATGGACTTGAAGAATCAACTAATGATGAAGTGGATGTTCCATTGAATGAAGTATCTAGCAAACAGACTGATCCTCAAGAAGATGGTAATAGTACTCCAAACATTTACAAAAATCCTACACTGAAACTGGTGGGCAAAGTAGTTCATAGGACTAATGAACACAGGAATGCCAAAAGAGATATTGATCATCAAGAAAAAGTTTTCAAGAGGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGGGGGACGATAAGAAATGTTCCTGTTGGGGCCGGTAAGCGCAAGAATAAGCACTCGGCTTTGCAGTATTGTCAGATACCTGTGACTCCTGATGCTGCATCTGTGATCCAGACAGATTCCAAACCTGCCAGTGATATGCATCTCTCATCTAACAGTCTCATGAAAGAAATGGAGAACATCCCAAGTCTCAGGGAGGAAACTCCTCTTAGTGAATCCTTAGAAACTGTGTTAAGACTCAATGGCCAGACAAAAATTGAAATGGCCTCTTCCACTCTCAAAGATGATGGTGAGGAGCCTTCCAGCTCTTCTATGAGATCTAAGGAAATAGAGCAGGTTGGTTTGGCACAACACTCTAATGGTTTAGTTCCTTTACATTCACTTCATTATTATCCTGTTCCTTCATGGTCTTACCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGCCTAGTAGCATAAGTTCTAGACCTGTTTACACAGGTTCTCCAACTATGATGGCAGTTCCTGGCTTCTCCATACCAACAGTAATACTACCAGCAGCACCTTATTCGTATTCGGGTTTTATGTCAAGCTGGGCTGACCAAAAGGAAGAGGCTTCATTGGTTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCAGTTAGCAACAGTACCTGTTCTGGTAATAGGTCCCCAACATTAGGAAAACATTCTAGAGATGGAAGCACACCGGGGGAAGATGCAATGAAACAGAATCTTTGGGTGCCTAAGACGGTAAGAATTAATGACCCAGAAGAGGCTGCAAATAGTTCCATATGGTCAACTTTGGGAACAAAGTCTGAACAGAACAAACTCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAGTGCCAGTCCTCATATTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCGCGCTCTGAATCTTTTCAGGAAAGCATGTAA 1455 0.4117 MPQVRDSAIKLFGADIHNIIHFPIKPATHFTDLHSLTQIQPLPQPIIIMNGLEESTNDEVDVPLNEVSSKQTDPQEDGNSTPNIYKNPTLKLVGKVVHRTNEHRNAKRDIDHQEKVFKRPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALQYCQIPVTPDAASVIQTDSKPASDMHLSSNSLMKEMENIPSLREETPLSESLETVLRLNGQTKIEMASSTLKDDGEEPSSSSMRSKEIEQVGLAQHSNGLVPLHSLHYYPVPSWSYQWNPCWNVKEFRPSSISSRPVYTGSPTMMAVPGFSIPTVILPAAPYSYSGFMSSWADQKEEASLVGSAFSGISLSSSSVSNSTCSGNRSPTLGKHSRDGSTPGEDAMKQNLWVPKTVRINDPEEAANSSIWSTLGTKSEQNKLIMKGSVFKSFEPKSSASPHILDDNQILRANPAAFSRSESFQESM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02492 484 PANTHER CYCLIC DOF FACTOR 2 5 483 IPR045174 GO:0003700|GO:0006355
Pumo10g02492 484 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Pumo10g02492 484 MobiDBLite consensus disorder prediction 245 269 - -
Pumo10g02492 484 MobiDBLite consensus disorder prediction 250 264 - -
Pumo10g02492 484 MobiDBLite consensus disorder prediction 374 403 - -
Pumo10g02492 484 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Pumo10g02492 484 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Pumo10g02492 484 MobiDBLite consensus disorder prediction 374 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02492 Pumo-Chr10 41985915 41989142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02492 113 483 C2C2-Dof Transcription Factor Family AT5G39660 38.046 2.58e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g02492 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02492 - - gmx:102664782 762.681