Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02481 ATGAAAGCTGAAGGGGATGTGAGGATGGTATCAGCAGAGGCTGCTGTGGTGTTTGCCAAGGCCTGTGAGATGTTCATTATGGAGCTCACAATGAGGGCTTGGGCTAATGTTGAGAAGAACCATAGGAAGACAAATAAGAAGAGTGACATTACATCTGCAATCTCAACGACGGATGTGTTTGATTTTCTTGTTGATACTGTCCCCAATCATGACAAAATATTGGAGCATCAAGGGTTTATAGCCATACCAAGAACAGGCACTGCTCCATCTCCAACTGAGAATGTTCCTTACTATCATATGCCCCCTCATCAGCAGCTTGTTCCCGGCCCTACATATGGTGCTCCAGGAATGGCTGTTGGTCCTTCTGCTTCATCCTACCCTAGAAAGCAACAATATGCTCCCCATTACATCTACCAAAAAGAATGCTTGCAAGAAGAATTCAACGACTTATGGGCAAAATAG 462 0.4459 MKAEGDVRMVSAEAAVVFAKACEMFIMELTMRAWANVEKNHRKTNKKSDITSAISTTDVFDFLVDTVPNHDKILEHQGFIAIPRTGTAPSPTENVPYYHMPPHQQLVPGPTYGAPGMAVGPSASSYPRKQQYAPHYIYQKECLQEEFNDLWAK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02481 153 SUPERFAMILY Histone-fold 1 69 IPR009072 GO:0046982
Pumo10g02481 153 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Pumo10g02481 153 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 85 - -
Pumo10g02481 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02481 Pumo-Chr10 41569990 41574834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02481 1 127 CCAAT-HAP5 Transcription Factor Family AT1G08970 46.457 4.80e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02481 CBFD_NFYB_HMF 1.1e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02481 K08066 - gmx:100807046 174.866