Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02480 ATGCAGGCTGAAGGGGATGTGAGGATGGTATCAGTTGACGCTGTTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATTATGGAGATCACTATGAGGGCTTGGGCTAATGCTGAGGAGAACCATAGGAAGACAATTAAGAAGAGTGACATTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTTGTTGATACTGTCCCCAGCCATGACAAAATATTGGAGCATCAAGGGTTTGTAGCCATACCAAGAACAGGCACTGCTCCAACTCCAACTCCAACTGAGAATGTTCCTTACTATCATATGCCCCCTCATCAGCAGCTTGTTCCAAACCCTCCATATGGTGCTCCAAGAATGGTCATGGGAATGCCCGTTCTTGATCAAAGTCATCCTGGGCTGCAAATCGATCCTTTTCTAACTCCAATGGGCCCCACCCCCAATCCACAAAGCCCTTCTCTTAATTCGGATGATTGA 474 0.4641 MQAEGDVRMVSVDAVVVFAKACEMFIMEITMRAWANAEENHRKTIKKSDIASAISRTDVFDFLVDTVPSHDKILEHQGFVAIPRTGTAPTPTPTENVPYYHMPPHQQLVPNPPYGAPRMVMGMPVLDQSHPGLQIDPFLTPMGPTPNPQSPSLNSDD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02480 157 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Pumo10g02480 157 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 83 - -
Pumo10g02480 157 Pfam Core histone H2A/H2B/H3/H4 2 54 IPR007125 GO:0003677
Pumo10g02480 157 SUPERFAMILY Histone-fold 1 69 IPR009072 GO:0046982
Pumo10g02480 157 MobiDBLite consensus disorder prediction 136 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02480 Pumo-Chr10 41558973 41559446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02480 1 124 CCAAT-HAP5 Transcription Factor Family AT1G08970 50.000 3.44e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02480 CBFD_NFYB_HMF 1e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02480 K08066 - gmx:100807046 191.815