Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02478 ATGAAGGCTGAAGGGGATGTGGGAATGGTATCAGCTGACGCTGCTGTGGTATTTGCCAAGGCCTGTGAAATGTTCATTATGGAGATCACTATGAGGGCTTGGGCTAATGCTAAGGAGAACCATAGGAAGACAATCAAGAAGAGTGACATTGCATCTGCAATCTCAAGGACATATGTGTTTGATTTTCTTGTTGATACTGTCCCCAGCCATGACAAAATATTGGAGCAGCAAGGGTTTGTAGCCATACGAAGAACAGGCACTGCTCCAACTCCAACTCCAACTGAGAATGTTCCTTACTATCATACGCCCCCTCATCAGCAGCTTGTTCCAGGCCCTCCATATGGTGCTCCAAGAATGGTCGTGGGAATGCCCGTTCTTGATCAAAATCATCTTGCGCTGCAAATCGATCCTTTTCCAACTCCAATGGGCCCCACCCCCAATCCACAAAACCCTTCTCCTAATTCGGATGATTGA 474 0.4705 MKAEGDVGMVSADAAVVFAKACEMFIMEITMRAWANAKENHRKTIKKSDIASAISRTYVFDFLVDTVPSHDKILEQQGFVAIRRTGTAPTPTPTENVPYYHTPPHQQLVPGPPYGAPRMVVGMPVLDQNHLALQIDPFPTPMGPTPNPQNPSPNSDD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02478 157 SUPERFAMILY Histone-fold 1 69 IPR009072 GO:0046982
Pumo10g02478 157 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Pumo10g02478 157 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 84 - -
Pumo10g02478 157 Pfam Core histone H2A/H2B/H3/H4 4 54 IPR007125 GO:0003677
Pumo10g02478 157 MobiDBLite consensus disorder prediction 136 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02478 Pumo-Chr10 41499634 41500107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02478 1 134 CCAAT-HAP5 Transcription Factor Family AT3G48590 46.269 2.76e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02478 CBFD_NFYB_HMF 2.2e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02478 K08066 - gmx:100807046 180.644