Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02477 ATGGATCAAAACCAGCATGGTGAAGCAGCAAGAGGGATTGGTCCTCTAGCACATGGCAAGAGCGAATATCAATGTAACCCCATTATGGCACCTACAAATTCTCCAACTCAGGCCGTTGGTCCTTCTGTCCCTTCCTACCCTAGAGAGCAACAATATGCTCCCCAATACATCTACCAGCCGCAGAATGAACGCTTGAAGGAACAACTCAATGACTTCTGGGAAAAACAGTGCCAGGAAATTCAGGAGACAACCAATTTCAGGACTCACAGCTTGCCTTTAGCTAGGATTAAGAAGATAATGAAGGCTGACGAGGATGTAAGCATGATATCAGCTGAGACTCCTGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACAAAGAAGGCTTGGGCTAATGCTGAGGATCACAGCAGGAGGATACTTCAGAAAAGTGACATTGCATCTGCAATCTCAAAGACTGAAGTGTTTGATTTTCTTGATGATATTGTCCCCAAAGATGCAGGCATACCAAGAACAGGCATAGCTCCAACAGAGAATGTTGATTTAAATATGCCACCTCATCAGAATGTTGCAGGCCCTCCATATGATGCTCCAACAATGGTCATGGGAAGGCCCGTTCCTGATCTAAACCATCATGCTCCCAATTCGGATGATTGA 666 0.452 MDQNQHGEAARGIGPLAHGKSEYQCNPIMAPTNSPTQAVGPSVPSYPREQQYAPQYIYQPQNERLKEQLNDFWEKQCQEIQETTNFRTHSLPLARIKKIMKADEDVSMISAETPVVFAKACEMFIMELTKKAWANAEDHSRRILQKSDIASAISKTEVFDFLDDIVPKDAGIPRTGIAPTENVDLNMPPHQNVAGPPYDAPTMVMGRPVPDLNHHAPNSDD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02477 221 Gene3D Histone, subunit A 54 168 IPR009072 GO:0046982
Pumo10g02477 221 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g02477 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 153 IPR003958 -
Pumo10g02477 221 SUPERFAMILY Histone-fold 53 162 IPR009072 GO:0046982
Pumo10g02477 221 FunFam Nuclear transcription factor Y subunit gamma 56 168 - -
Pumo10g02477 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 53 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02477 Pumo-Chr10 41494134 41494799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02477 1 208 CCAAT-HAP5 Transcription Factor Family AT1G08970 47.685 5.00e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02477 CBFD_NFYB_HMF 3.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02477 K08066 - gmx:100808341 300.827