Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02476 ATGGATCAAAACGAGCATGGTGAAGCAGCAACAGGGATTGGTTCTCCAGCACATGGTAAGAGCCAATATCAATCTAACCCCATGATGGCACCTCCAACTCAGGCTTTTGGTCCTTCTGTCCCTTCCTACCCTATAGAGCAACAATATGCTCCCCAATACATCTACCAGCCACAGAATGAATGCTTTAAGGAACAACTCAATGACTTCTTGGCAAAACAGTGCCAAGAAATTCAGGAGACCACCAATTTCAGAATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCACAAGGCAAGAACCAATATCAATCTAACCCTATGATGGCACCTACCATTCTTCCAACTCAGACATCTGGTCCTTCTGTTTCATCATCCAACCCAAGACAGCATCCATATGATCCCCAATACATGAACCAGCTACAACAAGAACGCTTGCAGCAACAACTCAACTACTTATGGGCAAAACAGTGCCAGGAAATTGAGGAGACCACTGGTTTAAGGACTCACAGCATGCCTTTGGCTAGGATTAAAAAGATAATGAAGGCTGAAGGGGATGTGAGGATGGTATCAGCTAATGCTGCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATTATGGAGATCACTATGAGGGCTTGGGCTAATGCTGAGGAAAACCATAGGAAGATAATTAAGAAGAGTGACATTGCATCTGCAATCTCAAGGACAAATGTGTTTGATTTTCTTGTTGATACTGTCGCCAGCCATGACAAAATATTGGAGCATCAAGGGTTTGTAGGCATACCAAGAACAGCCACTGCTCCAACTCCAACTGAGAATGTTCAGATGCCCCTTCATCAGCAGCTTGTTCCAGGCCCTCCATATGGTGCTCCAAGAATGGTCGTGGGAATGCCCGTTCTTGATCAAAATCATCCTGGGTTGCAAATCCATCCTTTTCCAACTCCAATGGGCCCCACCCCCAATCCACAAAACCCTTCTCCTAATTGGGATGATTGA 999 0.4525 MDQNEHGEAATGIGSPAHGKSQYQSNPMMAPPTQAFGPSVPSYPIEQQYAPQYIYQPQNECFKEQLNDFLAKQCQEIQETTNFRMDQNQHVQPAQEAQGKNQYQSNPMMAPTILPTQTSGPSVSSSNPRQHPYDPQYMNQLQQERLQQQLNYLWAKQCQEIEETTGLRTHSMPLARIKKIMKAEGDVRMVSANAAVVFAKACEMFIMEITMRAWANAEENHRKIIKKSDIASAISRTNVFDFLVDTVASHDKILEHQGFVGIPRTATAPTPTENVQMPLHQQLVPGPPYGAPRMVVGMPVLDQNHPGLQIHPFPTPMGPTPNPQNPSPNWDD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02476 332 SUPERFAMILY Histone-fold 130 243 IPR009072 GO:0046982
Pumo10g02476 332 Gene3D Histone, subunit A 135 248 IPR009072 GO:0046982
Pumo10g02476 332 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 121 255 - -
Pumo10g02476 332 MobiDBLite consensus disorder prediction 1 36 - -
Pumo10g02476 332 MobiDBLite consensus disorder prediction 88 131 - -
Pumo10g02476 332 MobiDBLite consensus disorder prediction 17 32 - -
Pumo10g02476 332 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 171 234 IPR003958 -
Pumo10g02476 332 MobiDBLite consensus disorder prediction 312 326 - -
Pumo10g02476 332 MobiDBLite consensus disorder prediction 312 332 - -
Pumo10g02476 332 FunFam Nuclear transcription factor Y subunit gamma 137 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02476 Pumo-Chr10 41445645 41446643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02476 153 299 CCAAT-HAP5 Transcription Factor Family AT1G54830 51.351 1.15e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02476 CBFD_NFYB_HMF 4.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02476 K08066 - gmx:100807580 327.405