Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02475 ATGGATCAAAACCAGCATGGTGAAGCAGCAAGAGGGATTGGTCCTCCAGCACTTGGCAAGAGCAAATATCAATGTAACCCCATTATGGCACCTACAAATCCTCCAACTCAGGCCGTTGGTCCTTCTGTCCCTTCCTACCCTAGAGAGCAACAATATGCTCCTCAATACATCTATCAGCTGCAGAATGAACGCTTGAAGGAACAACTCAATAACTTCTGGGAAAAACAGTGCCAGGTAATTCAGGAGACAACCAATTTCAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATAATGAAGGCTGACGAGGATGTGAGGATGATATCAGCTGAGACTCCTGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACAAAGAAGGCTTGGGCTAATGCTGAGGATCACAGCAGGAGGATACTTCAGAAAAGTGACATTGCATCTGCAATCTCAAAGACTGAAGTGTTTGATTTTCTTGATGATATTGTCCCCAAAGATGCAGGCATACCAAGAACAGGCACAGCTCCAACAGAGAATGTTGATTTAAATATGCCACCTGTTCAGAATGTTGCAAGCCCTCCATATGATGCTCCAACAATGGTCATGGGAAGGCCCGTTCCTGATCTAAACCATCATGCTCCCAATTCGGATGATTGA 666 0.4505 MDQNQHGEAARGIGPPALGKSKYQCNPIMAPTNPPTQAVGPSVPSYPREQQYAPQYIYQLQNERLKEQLNNFWEKQCQVIQETTNFRTHSLPLARIKKIMKADEDVRMISAETPVVFAKACEMFIMELTKKAWANAEDHSRRILQKSDIASAISKTEVFDFLDDIVPKDAGIPRTGTAPTENVDLNMPPVQNVASPPYDAPTMVMGRPVPDLNHHAPNSDD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02475 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 52 178 - -
Pumo10g02475 221 FunFam Nuclear transcription factor Y subunit gamma 56 168 - -
Pumo10g02475 221 SUPERFAMILY Histone-fold 50 162 IPR009072 GO:0046982
Pumo10g02475 221 Gene3D Histone, subunit A 54 168 IPR009072 GO:0046982
Pumo10g02475 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 153 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02475 Pumo-Chr10 41326485 41327150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02475 69 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 60.769 1.72e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02475 CBFD_NFYB_HMF 1.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02475 K08066 - gmx:100808341 304.293