Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02473 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCTACTTCTTCTGTTGGGTTTGAAACCCCCATTGAAAAAAGAAGGCCTAAGCATCCAAGGAGGAATTTGAAGTCACAAAAATGCAATAAGCAGAACCAAACCACTGGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAAAGCAAGAAAGGACGACAAGTTTATTTGGGGGCATATGATACTGAAGAATCTGCAGCCCGTACCTATGACCTTGCAGCCCTTAAGTACTGGGGAAAAGATGCAACCCTGAATTTCCCGATAGAAACTTATACAAAGGACCTTGAGGAAATGGGCAAGGTTTCAAAAGAAGAATATTTGGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATCTCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGCCGCTGGGAAGCTCGCATTGGAAGAGTATGCGGAAACAAGTACCTCTACTTGGGAACATTTAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGTACCGTGGACTCAATGCAGTGACCAATTTTGACATAAGCAAGTACATGGACAAAATAAAGAAGAAAAATGACCAAACCCAACAACAACAACAACAAACAGAAGCACAGACAGAAACAGTTCCCAACTCCTCTGACTCTGAAGAAGCAGAAGTAGAGCAACAAACAATAACTACACCACCCCCATCTGAAAATCTGCACATGCCCCCACAGCAGCACCAAGTTCAATACACCCCCCATGTCACTCCAAGGGAAGAATCATCATCACTGGTAACTATCATGGACCATGTGCTTGACCAGGATCTGCCATGGAGCTTCATGTACACTGGCCTGTCTCAGTTCCAAGATCCACACTTGACTTTCAGCAGAGGTGATGATGATTTGGTAGGCATGTTTGATGGTGCAGGATTTGAGGAAGACATTGATTTTCTGTTCAGCACAGAGCCTGGTGAGGCTGTGAGTGATGTCAATATGAGTGCAGTTTTGGATAGTATTGAGTGTGGAGACACAAATGGAGCTGGTGGAAGCATGGTGCATGTGGATAATAACAAGCAGAAGAAGATGCTATCATTTGCTTCTTCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTGACTATGCTCTATGA 1233 0.4412 MKRSPASSCSSSTSSVGFETPIEKRRPKHPRRNLKSQKCNKQNQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQVYLGAYDTEESAARTYDLAALKYWGKDATLNFPIETYTKDLEEMGKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTFKTQEEAAVAYDMAAIEYRGLNAVTNFDISKYMDKIKKKNDQTQQQQQQTEAQTETVPNSSDSEEAEVEQQTITTPPPSENLHMPPQQHQVQYTPHVTPREESSSLVTIMDHVLDQDLPWSFMYTGLSQFQDPHLTFSRGDDDLVGMFDGAGFEEDIDFLFSTEPGEAVSDVNMSAVLDSIECGDTNGAGGSMVHVDNNKQKKMLSFASSSSPSSTTTTVSCDYAL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02473 410 FunFam AP2-like ethylene-responsive transcription factor 153 214 - -
Pumo10g02473 410 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 MobiDBLite consensus disorder prediction 1 49 - -
Pumo10g02473 410 FunFam AP2-like ethylene-responsive transcription factor 51 120 - -
Pumo10g02473 410 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Pumo10g02473 410 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Pumo10g02473 410 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Pumo10g02473 410 Coils Coil 213 237 - -
Pumo10g02473 410 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 MobiDBLite consensus disorder prediction 222 283 - -
Pumo10g02473 410 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 273 - -
Pumo10g02473 410 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 MobiDBLite consensus disorder prediction 1 19 - -
Pumo10g02473 410 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
Pumo10g02473 410 MobiDBLite consensus disorder prediction 226 283 - -
Pumo10g02473 410 CDD AP2 51 119 IPR001471 GO:0003700|GO:0006355
Pumo10g02473 410 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02473 Pumo-Chr10 41033077 41038039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02473 22 405 AP2-EREBP Transcription Factor Family AT5G57390 43.077 2.30e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo10g02473 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02473 - - gmx:100527432 681.789