Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02466 ATGGGATATGAAACCAGAAAACTCTCAGATGAGTATGAAGTTTCAGAAGTCTTGGGAAGAGGTGGGTTTTCTGTTGTCAGAAAAGGCACCAAAAAATCAAGCAATGAGGCCAAAAGCCATGTAGCCATCAAAACCCTGAAAAGGTTAGGCACTGCCTCAAACTCCAACAACCCTTCTGGGTTTCCAAGACCAAAGGGTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCACATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTCATGAGGAGAATAGTGGAAAACGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTACGAGGACCCAAATGGGGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGGGAACTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGGCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTCCACAGGGACTTGAAGCCTGAGAATTGCCTTTTCTTGGATGTGAGGAGAGACTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCTGTTGAGGAATTTACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGACTATGTCTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACCAAGAGTGACATGTGGTCTCTGGGGGTGATTCTATATATCTTGCTCTCTGGGTATCCACCTTTCGTTGCTCAGTCTAACCGCCAAAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAGGACATTTCCCATTCAGCAAAGCAACTGATTTCAGATCTCGTGACTGTTGATCCTAGTAGGAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAAGCCAAAGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCTGAGCTTTAACGCTAGGCGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCACCACAATCTTCCTCAGAACCAAAAAGCTGAAATCCTTGGTGGGAACACATGATCTCACAGAAGAGGAAATTGAAAATCTCAGGATAAGTTTTAAGAAGATATGTGTGAGTGGAGACAGTGCCACTCTATCTGAGTTTGAGGAGGTGCTGAAAGCAATGAATATGCCATCACTGATCCCTCTAGCACCACGCATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTATGTGGGTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTCCGTTTGTGTTTCCAGATGTATGACACAGATCGATCCGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTGAGAGCTTTGCCAGAAGACTGTCTCCCAGCTGATATCACTGAACCTGGCAAATTGGATGAGATATTTGACCTAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACGTAGTTCTCTCTTCTCTTCGCCCACAGTAG 1581 0.4491 MGYETRKLSDEYEVSEVLGRGGFSVVRKGTKKSSNEAKSHVAIKTLKRLGTASNSNNPSGFPRPKGGEKSTAAMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDPNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFVAQSNRQKQQMIMNGNFSFYEKTWKDISHSAKQLISDLVTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLLSFNARRKLRAAAIASVWSTTIFLRTKKLKSLVGTHDLTEEEIENLRISFKKICVSGDSATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEDCLPADITEPGKLDEIFDLMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRPQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02466 526 SUPERFAMILY EF-hand 353 516 IPR011992 -
Pumo10g02466 526 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Pumo10g02466 526 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02466 526 CDD STKc_CAMK 12 307 - -
Pumo10g02466 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 134 - -
Pumo10g02466 526 Pfam EF hand 411 426 IPR002048 GO:0005509
Pumo10g02466 526 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Pumo10g02466 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 485 - -
Pumo10g02466 526 Pfam EF-hand domain pair 441 510 IPR002048 GO:0005509
Pumo10g02466 526 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Pumo10g02466 526 Gene3D Transferase(Phosphotransferase) domain 1 135 332 - -
Pumo10g02466 526 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Pumo10g02466 526 SUPERFAMILY Protein kinase-like (PK-like) 5 325 IPR011009 -
Pumo10g02466 526 CDD EFh 409 468 IPR002048 GO:0005509
Pumo10g02466 526 SMART efh_1 406 434 IPR002048 GO:0005509
Pumo10g02466 526 SMART efh_1 442 470 IPR002048 GO:0005509
Pumo10g02466 526 SMART efh_1 484 512 IPR002048 GO:0005509
Pumo10g02466 526 PRINTS Recoverin family signature 364 383 - -
Pumo10g02466 526 PRINTS Recoverin family signature 456 474 - -
Pumo10g02466 526 PRINTS Recoverin family signature 434 453 - -
Pumo10g02466 526 PRINTS Recoverin family signature 410 431 - -
Pumo10g02466 526 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Pumo10g02466 526 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 351 520 - -
Pumo10g02466 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 135 325 - -
Pumo10g02466 526 Gene3D Phosphorylase Kinase; domain 1 7 54 - -
Pumo10g02466 526 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Pumo10g02466 526 CDD EFh 443 510 IPR002048 GO:0005509
Pumo10g02466 526 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02466 526 Gene3D - 333 520 - -
Pumo10g02466 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pumo10g02466 526 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02466 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Pumo10g02466 526 MobiDBLite consensus disorder prediction 48 70 - -
Pumo10g02466 526 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Pumo10g02466 526 Gene3D Phosphorylase Kinase; domain 1 71 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02466 Pumo-Chr10 40907189 40912462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02466 89 513 EF-hand Containing Proteins AT3G10660 37.071 1.50e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Pumo10g02466 Pkinase 2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02466 K13412 - gmx:732616 993.03