Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02457 ATGGAAAGGTGTTTATCACCACAAACTTTGGCTTTTGCTCTTGTTGCTGTTGTTTGCATCTTCAACTGCTTGGTTAATGCCACTACAGATCCTAATGAAGCGAGAGTTTTAAATGCAATCTTTAGCAAATGGGGTATAACTGCAAATCATGAACACTGGAACATAAGCGGTGACCTATGCAGTGGAAGGGCCATTGACGACACATCTATTACTGTTCAAACTTACAACCCATTCATCAAATGTGACTGTTCCAGAGACAATGGCAATACTTGCCACATTACCAAACTGAAGGTTTATGCATTGAGCGTGGTGGGTGAAATTCCAGAAGAGCTATGGACTCTAACTTACCTTAAAGATTTGGATCTTCGCGAGAATCACTTGACTGGTTCTATATCTCCAGCCATTGGAAATCTAATTCGTATGGAGTCTTTAACCTTTGGCATAAATGCTTTGTCTGGGGAGCTTCCGAAGGAGTTAGGAAATCTTACAGAATTGAAATCACTGAGTTTTGGGTCAAACAACTTCTCAGGTTCTCTCCCATCTCAACTTGGGAATCTGTTAAAATTAGAACAACTCTACTTGGGTAGTTCGGGAATTAGTGGTTCAATTCCAACCACATTTGCAAGTCTGAAGAATCTGAGGACCGTATGGGCTGACGACGTCGAACTCAGAGGCAGAATACCAGACTTTATAGGGAATTGGTCTAACCTTAATGTCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCTCAATTCCCTTGTCATTTTCCAATTTGACTTCTTTGATAGAGTTGAGAATAACTGGTTTATTTAATGGGAGCTCTTCACTGGCTTTTTTGAGAAATTTGAAGTCTTTGAATATCTTAGAACTGAGGAATAATAATATTTCTGAATCAATTCCATCCTTTATTGGAGATTTGCAAACTTTGACCCAGTTGGATTTAAGCTTCAATAATATCACCGGACAGATTCCAGACTCAATTTTCAATTTGGGTTCACTTGTTTACTTGTTTCTTGGAAATAACAAATTAAGTGGTACCCTCCCTACCCAAAAAAGTGAGTCTCTTCTCAACATAGACTTGTCCTACAATGATTTGTCAGGGACCCTTCCTTCTTGGGTAAACCAACAAAATTTACAGCTCAATTTAGTAGCCAACAACTTGACAATAGAGAGTTCAAATAGCAGGGGTTTGCCTCCTGGGCTTAACTGCTTACAAAAAAATTTTCCTTGCAACCGTGGTGTTGGAAGATATTATGACTTTGCAATAAAGTGTGGTGGTCCTCAAGTTACATCCTCAAATGGAGTTGTGTTTGAAATGGACAACCAAACCCTTGGTCCAGCTACCTATTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTTGGATTATTCACTGGGAGCAACAATCCTCAATATAAAAAAACTGTGTCTAATCAGTTCACTCAAACAGTGGATTCACAGCTCTTCCAGACAGCTCGACTCTCTGCTTCATCACTGAGATATTATGGCCTGGGGCTGGAAAATGGTTTCTACAACATCACCCTCCAATTTGCAGAAACAATTATTCTGGATAATTCCGAATGGAAAAGTCTTGGGAGAAGATTCTTTGATATTTATATTCAGGGGACTCTTGTTTTAAAGGATTTTAATATAAAAAGGGAGGCTGGGGGCATCTCTTTTAGTGCTGTCCAAAAGAAATTTAGGGTTGAAGTGTTGGAAAATTATCTAGAGATCCATCTCCTTTGGGCTGGAAAAGGAACTTGTTGCATACCGGCTCAAGGTACTTATGGACCCCTGATTTCAGCCATTAGTGCTGTCCCAGATTTTACACCTACTGTTAGTAACAAACCTCCAAGCAGTAAAAGAAACAGAGCTGGTCTAATTGCGGGGATTGTTGTTGGTGTTGGAGCTGTAAGCTTTCTAATTGTTCTTGCAATCTTCTATGTCATTCGTAAAGGAAAACATGATGATGATGAAGAGCTTTTAGATATTGACACAAAGCCATACACTTTTAGTTATTCCGAGTTGAAGAATGCTACAGATGACTTTAATATTGGAAACAAGCTTGGAGAGGGAGGTTTTGGGCCTGTTCATAAGGGGACACTTGATGATGGAAGAGATATCGCTGTGAAACAACTATCTGTACAATCCAATCAGGGAAAGAATCAGTTCATAGCTGAGATTGCTACTATTTCTACTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTGGTCTATGAGTATCTTGAAAACAAGAGTCTTGATCAAGCACTATTTGGAAATTGTTTAAACCTCAATTGGTCTACACGCTATGATATATGCTTGGGTATAGCAAGAGGTTTAACTTATCTACATGAAGAGTCGCGAATCCGTATTGTACACCGTGATGTGAAGTCTAGTAATATTCTTCTTGATTATGAGCTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATTGGATATCTTGCACCGGAATATGCCATGCGTGGACACCTTACAGAGAAAGTTGATGTATTTTCCTTTGGTGTTGTGCTTTTGGAGATAGTTGGCGGAAGGCCAAATTCTAATTCAAGTTTGGAAGGAGACAAGATGTATCTTCTAGAATGGGCCTGGCATCTACATGAAAACAACAATGTATCCGAACTTGTAGATCCTAGATTAGTATCAGATTTTAATGAGGAAGAAGTAAAACGAGTTGTGGGAATAGCTCTCTTGTGCACTCAAACATCACCAACACTACGACCATCAATGTCCCGAGTGGTAGCAATGCTCTTAGGAGATATTGAAGTGAGCACTGTAACATCAAGGCCTGGATACTTGACTGACTGGAAATTTGATGATGAGACTAGCTTCATGACTGAGGTTGCAACCAAAGGACCAGACACAAGTTTTTACAATTCTTCAGCAAGTATCAGCATAGTGGGTGGTGCAGATCATTCACCAATTGATGCTTCTAAACCTATCCTTCATGAGACACTAAGTGGGAGAAGGTAA 3078 0.3931 MERCLSPQTLAFALVAVVCIFNCLVNATTDPNEARVLNAIFSKWGITANHEHWNISGDLCSGRAIDDTSITVQTYNPFIKCDCSRDNGNTCHITKLKVYALSVVGEIPEELWTLTYLKDLDLRENHLTGSISPAIGNLIRMESLTFGINALSGELPKELGNLTELKSLSFGSNNFSGSLPSQLGNLLKLEQLYLGSSGISGSIPTTFASLKNLRTVWADDVELRGRIPDFIGNWSNLNVLRFQGNSFEGSIPLSFSNLTSLIELRITGLFNGSSSLAFLRNLKSLNILELRNNNISESIPSFIGDLQTLTQLDLSFNNITGQIPDSIFNLGSLVYLFLGNNKLSGTLPTQKSESLLNIDLSYNDLSGTLPSWVNQQNLQLNLVANNLTIESSNSRGLPPGLNCLQKNFPCNRGVGRYYDFAIKCGGPQVTSSNGVVFEMDNQTLGPATYFVTDTNRWAVSNVGLFTGSNNPQYKKTVSNQFTQTVDSQLFQTARLSASSLRYYGLGLENGFYNITLQFAETIILDNSEWKSLGRRFFDIYIQGTLVLKDFNIKREAGGISFSAVQKKFRVEVLENYLEIHLLWAGKGTCCIPAQGTYGPLISAISAVPDFTPTVSNKPPSSKRNRAGLIAGIVVGVGAVSFLIVLAIFYVIRKGKHDDDEELLDIDTKPYTFSYSELKNATDDFNIGNKLGEGGFGPVHKGTLDDGRDIAVKQLSVQSNQGKNQFIAEIATISTVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFGNCLNLNWSTRYDICLGIARGLTYLHEESRIRIVHRDVKSSNILLDYELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKVDVFSFGVVLLEIVGGRPNSNSSLEGDKMYLLEWAWHLHENNNVSELVDPRLVSDFNEEEVKRVVGIALLCTQTSPTLRPSMSRVVAMLLGDIEVSTVTSRPGYLTDWKFDDETSFMTEVATKGPDTSFYNSSASISIVGGADHSPIDASKPILHETLSGRR 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02457 1025 Gene3D Ribonuclease Inhibitor 30 269 IPR032675 -
Pumo10g02457 1025 SMART LRR_typ_2 162 186 IPR003591 -
Pumo10g02457 1025 SMART LRR_typ_2 114 138 IPR003591 -
Pumo10g02457 1025 SMART LRR_typ_2 282 304 IPR003591 -
Pumo10g02457 1025 SMART LRR_typ_2 306 330 IPR003591 -
Pumo10g02457 1025 Pfam Malectin domain 419 604 IPR021720 -
Pumo10g02457 1025 Gene3D Phosphorylase Kinase; domain 1 648 759 - -
Pumo10g02457 1025 SUPERFAMILY L domain-like 80 391 - -
Pumo10g02457 1025 FunFam Leucine-rich repeat receptor-like protein kinase 417 608 - -
Pumo10g02457 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Pumo10g02457 1025 FunFam Putative LRR receptor-like serine/threonine-protein kinase 272 395 - -
Pumo10g02457 1025 FunFam Leucine-rich repeat receptor-like protein kinase 653 759 - -
Pumo10g02457 1025 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 986 - -
Pumo10g02457 1025 Gene3D - 418 608 - -
Pumo10g02457 1025 ProSiteProfiles Leucine-rich repeat profile. 308 330 IPR001611 GO:0005515
Pumo10g02457 1025 FunFam Putative LRR receptor-like serine/threonine-protein kinase 760 964 - -
Pumo10g02457 1025 ProSiteProfiles Protein kinase domain profile. 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02457 1025 Gene3D Transferase(Phosphotransferase) domain 1 760 962 - -
Pumo10g02457 1025 CDD STKc_IRAK 690 952 - -
Pumo10g02457 1025 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Pumo10g02457 1025 FunFam Os05g0263100 protein 34 271 - -
Pumo10g02457 1025 Gene3D Ribonuclease Inhibitor 270 395 IPR032675 -
Pumo10g02457 1025 SMART serkin_6 684 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02457 1025 SUPERFAMILY Protein kinase-like (PK-like) 667 973 IPR011009 -
Pumo10g02457 1025 Pfam Protein tyrosine and serine/threonine kinase 685 952 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02457 Pumo-Chr10 40480589 40515580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02457 104 214 Receptor kinase-like Gene Family AT1G56120 33.333 1.43e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02457 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02457 - - gmx:100780567 1839.31