Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02449 ATGAAGCTGGGATGGGACCTCCAAACTGGTCTGGAACGGAGACTTACTGCTTGGAAGAGTCTAGATGATCCATCCCCAGGAGACGTTTATCGGGTTCTAGAACTCAATAACTACCCTGAGTTTTATACAATGAAGGGAACAAAAAATAACACTATTTTGCGCTTTAATTTTGTCAGCAATATCGATGAGAAGTACTGCATCTATAAACCCATGAATAATTTTGTCATATCGAGAATTGTAATAAACCAAACAAGTACAGTTTATCTCTATGTATGGGTGGAGGATGATCATAATTGGAGGACATTCACGTCAGTACCAAAAGACTTTTGTGACTCTTATGGTCTCTGTGGAGCCTATGGAAATTGCAAGACTACAGAAACACAGGTGTGCCAATGTTTGAAAGGGTTTAGACCAAAGTCACCACAAGCATGGGTTTTATCTGGGTGGAGTCAAGGATGTGTCCGCAATAAACCGTTAAGTTGCAATGATAAAGAGAAAGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCAGATACCACACATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGCAGAGTCAAGTGCTTGAATAATTGTTCTTGTATGGCCTATACTAATTCAGACATAAGAGGTGCAGGCAGCGGTTGTGTCATGTGGTTTGGAGATCTCATTGACATTAAACAGTATGACTATGAAACTGGTGGGCAAGATCTACATATCAGGATGCCTGCTTCAGAGTTAGAACCTGCACATAGGCACAAGAAGAACAGGGCAATTATAGTCGCTTCCACCGTTGCTGCAATTTGTGGTGTTCTGTTACTAAGTTCTTATTTGATCTGCAGAATCAGGAGGAACAATACTGGGAAAGACAAGAGTGACAAGGATGACATTAATTTACCAACATTTGATTTTTCATTCATCTCCAATGTCACAAATCACTTTTCACAAAATAACAAATTGGGACAAGGTGGCTTTGGACCAGTGTATAAGGGCATATTACCAGATGGGCAAGAGATTGCAGTTAAGAGGCTTTCTAAAACTTCTAGACAAGGCTTGGACGAGTTCAAAAATGAAGTCATGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAGCAAGATGAGAAGTTGTTGATTTATGAATTCATGCCCAATAGAAGCTTGGACTACTTTATTTTTGATTCAACAAGGCATTCTTTAATAGGTTGGGCTAAGCGATTTGAAATTATTGGTGGAATTGCTCGAGGACTTTTGTATCTTCATCAAGACTCTAGACTAAAGATCATTCACAGGGATCTCAAAACCAGTAATGTTCTTCTTGATAGCAATATGAACCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGGGCTAGATCAAGATGAAGCAAATACAAATAGAGTAATGGGAACATATGGTTATATGCCTCCTGAGTATGCTGTACATGGATCTTTCTCAGTCAAATCTGATGTCTTCAGCTTTGGTGTGATTATGCTGGAAATAATCAGTGGGAAGAGGAACAGGGGATTTTGTGACCCACAACATCACCTAAATCTTCTTGGACATGCATGGAGACTATGGATTGAAAAAAGGCCAATGAAACTTATGGATGACTTAGTGGACGATTCAGCTGATCCATCTGAAATAATAAGATATATTCATATTGGTTTGTTATGTGTACAACAGAGACCAGAGGATAGGCCAAACATGTCATCGGTAATTTTAATGTTGAATGGTGAAAACTTGTTACCAGAGCCAAGTCAACCTGGGTTCTACACAGGAAAAGATCATCCAACCATGACAGATTCTTCTGCAAGAAATATTGATGTGCATTCCCTCAATGAAATGTCTAACTCAGTGTTGGAGGCAAGATAA 1908 0.391 MKLGWDLQTGLERRLTAWKSLDDPSPGDVYRVLELNNYPEFYTMKGTKNNTILRFNFVSNIDEKYCIYKPMNNFVISRIVINQTSTVYLYVWVEDDHNWRTFTSVPKDFCDSYGLCGAYGNCKTTETQVCQCLKGFRPKSPQAWVLSGWSQGCVRNKPLSCNDKEKDGFVKFEGLKVPDTTHTWLDESIGLEECRVKCLNNCSCMAYTNSDIRGAGSGCVMWFGDLIDIKQYDYETGGQDLHIRMPASELEPAHRHKKNRAIIVASTVAAICGVLLLSSYLICRIRRNNTGKDKSDKDDINLPTFDFSFISNVTNHFSQNNKLGQGGFGPVYKGILPDGQEIAVKRLSKTSRQGLDEFKNEVMLIAKLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDSTRHSLIGWAKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMNPKISDFGMARTFGLDQDEANTNRVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIMLEIISGKRNRGFCDPQHHLNLLGHAWRLWIEKRPMKLMDDLVDDSADPSEIIRYIHIGLLCVQQRPEDRPNMSSVILMLNGENLLPEPSQPGFYTGKDHPTMTDSSARNIDVHSLNEMSNSVLEAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02449 635 SUPERFAMILY Protein kinase-like (PK-like) 300 588 IPR011009 -
Pumo10g02449 635 ProSiteProfiles Protein kinase domain profile. 317 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02449 635 SMART ntp_6 164 245 IPR003609 -
Pumo10g02449 635 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 283 392 - -
Pumo10g02449 635 CDD STKc_IRAK 323 590 - -
Pumo10g02449 635 ProSiteProfiles PAN/Apple domain profile. 161 246 IPR003609 -
Pumo10g02449 635 Pfam S-locus glycoprotein domain 40 140 IPR000858 GO:0048544
Pumo10g02449 635 Pfam PAN-like domain 161 229 IPR003609 -
Pumo10g02449 635 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 393 596 - -
Pumo10g02449 635 CDD PAN_AP_plant 158 246 - -
Pumo10g02449 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Pumo10g02449 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 66 612 - -
Pumo10g02449 635 Gene3D Phosphorylase Kinase; domain 1 280 392 - -
Pumo10g02449 635 Gene3D Transferase(Phosphotransferase) domain 1 393 594 - -
Pumo10g02449 635 Pfam Protein tyrosine and serine/threonine kinase 319 585 IPR001245 GO:0004672|GO:0006468
Pumo10g02449 635 SMART serkin_6 317 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02449 Pumo-Chr10 39375906 39378864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02449 261 602 Receptor kinase-like Gene Family AT4G23230 54.624 1.96e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02449 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02449 - - gmx:100801916 1014.22