Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02447 ATGGAAAGGTGTTTATCACCACAAACTTTGGCTTTTGCTCCTGTTGCTGTTGTTTGCATCTTCAACTGCTTGGTTAATGCCACTACAGATCCTAATGAAGCGAGAGTTTTAAATGCAATCTTTAGCAAATGGGGTATAACTGCAAATCATGAACACTGGAACATAAGCGGTGACCTATGCAGTGGAAGGGCCATTGACGACACACCTATTACTGATCAAACTTACAACCCATTCATCAAATGTGACTGTTTCAGAGACAATGGCAGTACTTGCCACATTACCAAACTGAAGGTTTATGCATTGAGCGTGGTGGGTGAAATTCCAGAAGAGCTATGGACTCTAACTTACCTCTCACATTTGGATCTTCGCCAGAATCACTTGACTGGTTCTATATCTCCAGCCATTGGAAATCTAACTCGTATGGAGTATTTAAGCTTTGGCATAAATGCTTTGTCAGGGGAGCTTCCGAAGGAGTTAGAAAATCTTACAGAATTGAAATCACTGAGTTTTTCGTCAAACAACTTCTCAGGTTCTCTCCCATCTCAACTTGGGAATCTGTTAAAATTAGAACAACTCTACTTGGGTAGTTCGGGAATTAGTGGTTCAATTCCAACCACATTTGCAAGTCTGAAGAATCTGAAGACCGTGAGGTTTCAGGGTAATTCTTTTGAAGGCTCAATTCCCTTGTCGTTTTCCAATTTGACTTCTTTGATAGAGTTGAGAATAACTGGTTTATTTAATGGGAGCTCTTCACTGGCTTTTTTGAGAAATTTGAAGTCTTTGAATATCTTAGAACTAAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGAGATTTGCAAAATTTGACCCAGTTGGATTTAAGTTTCAATAATATCACCGGACAGATTCCAGACTCAATTTTCAATTTGGGTTCACTTGTTTACTTGTTTCTTGGAAATAACAAATTAAGTGGTACCCTCCCTACCCAAAAAAGTGAGTCTCTTCTCAACATAGACTTGTCCTACAATGATTTGTCAGGGACCCTTCCTTCTTGGGTAAACCAACAAAATTTACAGCTCAATTTAGTAGCCAACAACTTGACAATAGAGAGTTCAAATAGCAGGGGTTTGCCTCCTGGGCTTAACTGCTTACAAAAAAAATTTCCTTGCAACCGTGGTGTTGGAAGATATTATGACTTCGCAATAAAGTGTGGTGGTCCTCAAATTACATCCTCAAATGGAGTTGTGTTTGAAATGGACAACCAAACCCTTGGTCCAGCTACCTATTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTCGGATTATTCACTGGGAGCAACAATCCTCAATATAAAAAAACTGTGTCTAATCAGTTCACTCAAACCGTGGATTCAGAGCTCTTCCAGACAGCTCGACTCTCTGCTTCATCACTGAGATATTATGGTCTAGGGCTGGAAAATGGTTTCTACAACATCACCCTCCAATTTGCAGAAACAATTATTCTGGATAATTCTGAATGGAAAAGTCTTGGGAGAAGAATCTTTGATATTTATATTCAGGGGACTCTTGTTTTAAAGGATTTTAATATAAAAAGGGAGGCTGGGGGCATCTCTTTTCGTGCTGTCCAAAAGAAATTTAGGGTTGAAGTGTTGGAAAATTATCTAGAGATCCATCTCCTTTGGGCTGGAAAAGGAACTTGTTGCATACCGGCTCAAGGTACTTATGGACCCCTGATTTCAGCCATTAGTGCTGTCCCAGATTTTACACCTACTGTTAGTAACAAACCTCCAAGCAGTAAAAGGAACAGAGCTGGTCTAATTGCGGGGATTGTTGTTGGTGTTGGAGCTGTAAGCTTTCTAATTGTTCTTGCAATCTTCTATGTCATTCGTAAAGGAAAACGTCATGATGATGATGAAGAGCTTTTAGATATTGACACAAAGCCATACACTTTTAGTTATTCCGAGTTGAAGAATGCTACAGATGACTTTAATCTTGGAAACAAGCTTGGAGAAGGAGGTTTTGGGCCTGTTCATAAGGGGACACTTGATGATGGAAGAGATATCGCTGTGAAACAACTATCTGTACAATCCAATCAGGGAAAGAATCAGTTCATAGCTGAGATTGCCACTATCTCTACTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTGGTCTATGAGTATCTTGAAAACAAGAGTCTTGATCAAGCACTATTTGCAGGAAATTGTTTAAACCTCAATTGGTCTACACGCTATGATATATGCTTGGGTATAGCAAGAGGGTTAACTTATCTACATGAAGAGTCGCGAATCCGTATTGTACACCGTGATGTGAAGTCTAGTAATATTCTTCTTGATTATGAGCTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATTGGATATCTTGCACCGGAATATGCCATGCGTGGACACCTTACAGAGAAAGTTGATGTATTTTCCTTTGGTGTTGTGCTTTTGGAGATAGTTGGCGGAAGGCCAAATTCTGATTCAAGTTTGGAAGGAGACAAGATGTATCTTCTAGAATGGGCCTGGCATCTACATGAAAACAACAATGTATCCGAACTTGCAGATCCTAGATTAGTATCTGATTTTAATGAGGAAGAAGTAAAACGAGTTGTGGGAATAGCTCTCTTGTGCACTCAAACATCACCAACATTACGACCATCAATGTCCCGAGTGGTAGCAATGCTCTTAGGAGATATTGAAGTGAGCACTGTAACATCAAGGCCTGGATACTTGACTGATTGGAAATTTGATGATGTGACTAGCTTCATGACTGAGGTTGCAACCAAAGGATCAGACACCAGTTTTTACAATTCTTCAGCAAGTATCAGCATAGTGGGTGGTGCAGATCATTCACCAGTTGATGCTTCTAAACCTATCCTTCATGAGACACTTAGTGGGAGTAGGTAA 3012 0.3938 MERCLSPQTLAFAPVAVVCIFNCLVNATTDPNEARVLNAIFSKWGITANHEHWNISGDLCSGRAIDDTPITDQTYNPFIKCDCFRDNGSTCHITKLKVYALSVVGEIPEELWTLTYLSHLDLRQNHLTGSISPAIGNLTRMEYLSFGINALSGELPKELENLTELKSLSFSSNNFSGSLPSQLGNLLKLEQLYLGSSGISGSIPTTFASLKNLKTVRFQGNSFEGSIPLSFSNLTSLIELRITGLFNGSSSLAFLRNLKSLNILELRNNNISDSIPSFIGDLQNLTQLDLSFNNITGQIPDSIFNLGSLVYLFLGNNKLSGTLPTQKSESLLNIDLSYNDLSGTLPSWVNQQNLQLNLVANNLTIESSNSRGLPPGLNCLQKKFPCNRGVGRYYDFAIKCGGPQITSSNGVVFEMDNQTLGPATYFVTDTNRWAVSNVGLFTGSNNPQYKKTVSNQFTQTVDSELFQTARLSASSLRYYGLGLENGFYNITLQFAETIILDNSEWKSLGRRIFDIYIQGTLVLKDFNIKREAGGISFRAVQKKFRVEVLENYLEIHLLWAGKGTCCIPAQGTYGPLISAISAVPDFTPTVSNKPPSSKRNRAGLIAGIVVGVGAVSFLIVLAIFYVIRKGKRHDDDEELLDIDTKPYTFSYSELKNATDDFNLGNKLGEGGFGPVHKGTLDDGRDIAVKQLSVQSNQGKNQFIAEIATISTVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFAGNCLNLNWSTRYDICLGIARGLTYLHEESRIRIVHRDVKSSNILLDYELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKVDVFSFGVVLLEIVGGRPNSDSSLEGDKMYLLEWAWHLHENNNVSELADPRLVSDFNEEEVKRVVGIALLCTQTSPTLRPSMSRVVAMLLGDIEVSTVTSRPGYLTDWKFDDVTSFMTEVATKGSDTSFYNSSASISIVGGADHSPVDASKPILHETLSGSR 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02447 1003 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 178 - -
Pumo10g02447 1003 ProSiteProfiles Protein kinase domain profile. 661 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02447 1003 SUPERFAMILY Protein kinase-like (PK-like) 644 956 IPR011009 -
Pumo10g02447 1003 FunFam Leucine-rich repeat receptor-like protein kinase 631 736 - -
Pumo10g02447 1003 Gene3D - 394 584 - -
Pumo10g02447 1003 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Pumo10g02447 1003 Gene3D Ribonuclease Inhibitor 30 245 IPR032675 -
Pumo10g02447 1003 Pfam Protein tyrosine and serine/threonine kinase 662 930 IPR001245 GO:0004672|GO:0006468
Pumo10g02447 1003 SMART serkin_6 661 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02447 1003 SUPERFAMILY L domain-like 75 367 - -
Pumo10g02447 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 963 - -
Pumo10g02447 1003 SMART LRR_typ_2 114 138 IPR003591 -
Pumo10g02447 1003 SMART LRR_typ_2 282 306 IPR003591 -
Pumo10g02447 1003 SMART LRR_typ_2 258 280 IPR003591 -
Pumo10g02447 1003 SMART LRR_typ_2 162 186 IPR003591 -
Pumo10g02447 1003 CDD STKc_IRAK 667 930 - -
Pumo10g02447 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Pumo10g02447 1003 Gene3D Ribonuclease Inhibitor 246 371 IPR032675 -
Pumo10g02447 1003 Gene3D Phosphorylase Kinase; domain 1 625 736 - -
Pumo10g02447 1003 Gene3D Transferase(Phosphotransferase) domain 1 737 940 - -
Pumo10g02447 1003 Pfam Malectin domain 395 580 IPR021720 -
Pumo10g02447 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 248 371 - -
Pumo10g02447 1003 FunFam Leucine-rich repeat receptor-like protein kinase 393 584 - -
Pumo10g02447 1003 ProSiteProfiles Leucine-rich repeat profile. 284 306 IPR001611 GO:0005515
Pumo10g02447 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02447 Pumo-Chr10 39248991 39287780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02447 141 973 Receptor kinase-like Gene Family AT1G56120 61.655 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02447 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02447 - - gmx:100780567 1786.16