Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02441 ATGGATTGTGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTCATAGAACTGGGTAACACTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTCAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCTTCTCTTAAATCGGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACCATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTACCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATTCCCCTTCTATGCTAATCAACATCCTGCAGTCATCTCTAACCCCTGTTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTATCCCCTCCACTTCATCCGGGTGGTCGTTCCAACGTGTCAGGAAAACAAGAGTCCAAAAGCAAGTCATCCAGGGAGAGCAAGGCTGAAAAGAACGAGGATTCTAACGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCTGGACATAGAAAATCAAGCAAGTTGTCAAGGAGGGAAAGCAGTTGCACAGAAGGGAGTTCATTAGGTAGGTGCTCTTCATCCCGAAGCGTTCAGGATAGCTCATCAAGCAGTGTAGTTGCAAGCAGAAAGGATAATGAATGA 846 0.4397 MDCAARKTQKADREKLRRDRLNEQFIELGNTLDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPFPFYANQHPAVISNPCSTFVPYLAPNTIVEQQSTQYVSPPLHPGGRSNVSGKQESKSKSSRESKAEKNEDSNDVTTDLELKTPGSSADQDLSSGHRKSSKLSRRESSCTEGSSLGRCSSSRSVQDSSSSSVVASRKDNE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02441 281 MobiDBLite consensus disorder prediction 247 281 - -
Pumo10g02441 281 Coils Coil 45 107 - -
Pumo10g02441 281 PANTHER TRANSCRIPTION FACTOR BHLH121 3 278 IPR044579 GO:0003700|GO:0006879
Pumo10g02441 281 MobiDBLite consensus disorder prediction 219 234 - -
Pumo10g02441 281 Coils Coil 4 24 - -
Pumo10g02441 281 MobiDBLite consensus disorder prediction 197 218 - -
Pumo10g02441 281 MobiDBLite consensus disorder prediction 178 281 - -
Pumo10g02441 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 75 IPR036638 GO:0046983
Pumo10g02441 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 55 IPR011598 GO:0046983
Pumo10g02441 281 SMART finulus 11 61 IPR011598 GO:0046983
Pumo10g02441 281 Pfam Helix-loop-helix DNA-binding domain 6 55 IPR011598 GO:0046983
Pumo10g02441 281 Gene3D - 4 88 IPR036638 GO:0046983
Pumo10g02441 281 CDD bHLH_AtILR3_like 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02441 Pumo-Chr10 38593539 38600569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02441 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.550 5.15e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02441 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02441 - - gmx:100804250 446.817