Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02436 ATGTCGGTGCTGATCGTGACGAGCTTAGGGGACCTTGTCGTGGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGGAATTTATTTCACACTGTTCAAAAGGATTTTACTGCTCAAACTGGCGATCCAACTGGCACGGGAACTGGTGGCGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCGGTGATGAGATTCACATTGATCTGAAGCATTCCAAGACTGGAACGGTTGCCATGGCTAGTGCTGGAGAGAATCTGAATGCTTCACAGTTCTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAGAAGGGAAGACCATATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGATGATCCTTCTCAGCTGTCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTCCCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTGATGAGGACTTGCATACAATTTTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCAAAAGACTAGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGAAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGCACGGGAGATGCTACAATGACCCAACCACAAGCAAAATACGTCTTAAAGGATGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACTCACAAAGTCCAAGGCGAGATGTAAAACACCAAAGGCATGACAGGGATGACCCAGTTGAAAGAAAAGATCATAGAAGTCATAGAGATCAGGATATGGTAGACTTAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGGCATGGGGGAAATGGAGGCAACAAAGCAAGGCCTGAAAGAGGTGCAAGAGATTTGGATTCCCATGCTGACAAGAAAGACAGAGATAGGCACACGGGAAGACATGGAGATGATGATTACAAGCGGAAAGATGAGCGTGACTCCAGAAAAAGAGACGAAGATGAAGGCTACAAGAGGAAAGACGAGCGAGACTCGAGAAAAAGAGACGAGGATGAAGGCTACAAGAGGAAAGACGAGCGAGACTCGAGAAAAAGAGACGAGGATGATGGCTACAAGCGGAAAGGCGAGCGAGACTCAAGAAAAAGAGATGAAGATGATAGCTATAGAGAAAGACGAACTAGTCGAGATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATGAGAGAGATTATAGGAAGAGACCTGAAGAAAGTGGAAAGCAAGATATGAAGATGGATTCCGGACGAAGAAAAGGAAGTCCAGGTGATGGGGATAACAAAAATGGAAGGGATGATGAGGATTTCAGAAACAGAAGGGAAGAACGTGGGAATAAAAGACAAGATGTTGAAGCTGATGATGATTACAAACGTAGAAGGGAGGACGCGGATTACAAACGCAGAAGGGATGATGGAGATTACAGACATAGAAGGGAAGAACGTGGACATAAAAGACTAGATGTTGAATCTGATGATTATCCTCATAGGAGGCATCATGGTGACAGGAGATGA 1950 0.4267 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGNLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFGDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESDEDLHTIFSRFGTVSSAEIIRDQKTSDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMTQPQAKYVLKDDNAQRGGDNARYEMVFDGDNSQSPRRDVKHQRHDRDDPVERKDHRSHRDQDMVDLNNRDRYGDRSRGHGGNGGNKARPERGARDLDSHADKKDRDRHTGRHGDDDYKRKDERDSRKRDEDEGYKRKDERDSRKRDEDEGYKRKDERDSRKRDEDDGYKRKGERDSRKRDEDDSYRERRTSRDDRRNTDSSHLERRNERDYRKRPEESGKQDMKMDSGRRKGSPGDGDNKNGRDDEDFRNRREERGNKRQDVEADDDYKRRREDADYKRRRDDGDYRHRREERGHKRLDVESDDYPHRRHHGDRR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02436 649 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 229 IPR035542 -
Pumo10g02436 649 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Pumo10g02436 649 Gene3D - 298 352 - -
Pumo10g02436 649 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 MobiDBLite consensus disorder prediction 358 649 - -
Pumo10g02436 649 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Pumo10g02436 649 MobiDBLite consensus disorder prediction 422 649 - -
Pumo10g02436 649 CDD cyclophilin_RRM 4 169 IPR035538 -
Pumo10g02436 649 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Pumo10g02436 649 Pfam Zinc knuckle 314 329 IPR001878 GO:0003676|GO:0008270
Pumo10g02436 649 MobiDBLite consensus disorder prediction 365 411 - -
Pumo10g02436 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 289 IPR000504 GO:0003723
Pumo10g02436 649 SUPERFAMILY RNA-binding domain, RBD 229 313 IPR035979 GO:0003676
Pumo10g02436 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 295 IPR000504 GO:0003723
Pumo10g02436 649 SMART rrm1_1 223 291 IPR000504 GO:0003723
Pumo10g02436 649 Gene3D - 1 173 IPR029000 -
Pumo10g02436 649 ProSiteProfiles Zinc finger CCHC-type profile. 315 328 IPR001878 GO:0003676|GO:0008270
Pumo10g02436 649 Gene3D - 228 297 IPR012677 -
Pumo10g02436 649 SMART c2hcfinal6 314 330 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02436 Pumo-Chr10 38252104 38260186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02436 7 166 U-box Gene Family AT5G67530 41.250 2.17e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02436 K12735 - gmx:100776900 1005.36