Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02422 ATGGTCTGTTGTAAATCTCATTTCCTGCTTGTTTTTAGATACTCGTGGTTGTGGTGGACTAGTTGTATTTGTATCCACATTACTATTGCTGCAAAGCACAGTTTGAAGCCCGGAGATACACTGAATTTCACAACCGACCCAATACTATGTTCGGAAAGGGGTAAGTATTGCATGATTTTTCGACAAATAGCTTCAACTGACTGCGCTTACTTGGGTGTTTATGCCCAAGGAAAAGATAATTGGTTAGTCTGGATTGCAAATAGAATTCAACCCGTTGACATGAATTCAGCAGTTCTGTTGCTAGATCACTCTGGTGTACTGAAAATAGAATCCAAAAACATGGAACCTATCATCCTTTACTCTTCACCACAACCATCCAACAACAACACTGTGGCCACCTTAATGGACACAGGCAACTTTGTGTTACACCCGAATGGGACTGAGAGTACTGTGTTGTGGCAAAGTTTTGATTATCCAACTGATACTTTGCTCCCTGGGATGAAGTTAGGAGTCAATCACAAAACTGGTCATAATTGGTCACTAGTTTCATCGTTGACTGGATCCAATTGGAGTCTAGGGGCGTTCACGCTTGAATGGGAACCCAGAAGAAGAGAATTGATCATCAAGCGACGAGGTCAATTGTGCTGGACTAGTGGAGAACTTGGAAACAACAATGGATTCATGCACAGCACATATTACACTATTGTCTCAAACGAAAATGAAAGTTGCTTCACAATTACAAGATCAAACAAAGGGCTTACAATATGGACGCTACTAGAAACTGGGCAGTTGATAAATCGGAAAGGGGTTGATGTTGCAAGGGCTGATATGTGTTATTGTGATGGATTCACAGATTACTATGATGATGGAACTGGTTGTAAATTCTTGCATTTGAATTCAACGGAAGGTTCTAATTTTGCAAGTGGGGGCGAAAAGTTTTACATTTTAATGGCAAAGAATCATCACAAAGGTACAAAAAAGTGGATATGGATTATTCTAATAGTAGCTGCTCTGTCTGTAATCAGTGCTTTCGTTCTGTATCTGGCCTTAAAGAAAAGAAAACTTCGGTTTGAAGAGAAAAGAAGAAAAGGAATGCAAACTAATGAGATGGCAGATTTAGCAACTTCAAATAGCTTCTATGATGTCAGAGATCTTGAAGATGAGCTCAAGGAGAGACAAGATCTAAAAGTATTTAACTATACATCAGTACTGTCAGCAACCAATGATTTTTCAACTGAAAACAAGTTAGGACAAGGAGGCTTTGGACCTGTTTATAAGGGAATCCTAACAAATAGGCAAGAAATTGCAATAAAACGACTTTCAAAAACTTCTAGACAAGGCATTGTGGAATTCAAAAATGAACTAATGCTTATATGCGAACTTCAGCACATAAATCTTGTACAGCTACTTGGATACTGCATTCATGAAGAAGAGAGGATTCTAATTTATGAGAATATGCCAAACAAAAGCTTGGATTTCTATCTGTTCGATTGCACTAGAAGCCTGTTGCTAGACTGGAAGAAGCGCTTCAACATAATAGAAGGAATTGCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAGTCATTCACAGAGACTTGAAAGCTAGTAACATACTTCTTGATGAGAATATGAACCCAAAAATATCCGATTTTGGATTGGCAAGAATGTTTATGCAACAAGAATCCACAGGCAATACTAGTAGGATTGTTGGGACATATGGTTACATGTCACCTGAATATGCCATGGAAGGAATTTTCTCTACAAAATCTGATGTCTATAGTTTTGGAGTGTTACTACTTGAGATTGTTAGTGGCAGAAGAAACACTAGCTTCTATGATGCTGACCCTGACCACCCTTTGAATCTAATAGGACATGCATGGGAGTTATGGAATGAAGATGTGTCTCTAAAATTAATTGATCCATCATTGAATGATTCATTCGATCCCGATGAAGTGAAAAGATGCATTCATGTTGGTCTCTTGTGTGTAGAACACTATGCAAATGATCGACCCACAATGTCTAATGTCCATATCAATGTTATCAAATGA 2058 0.3829 MVCCKSHFLLVFRYSWLWWTSCICIHITIAAKHSLKPGDTLNFTTDPILCSERGKYCMIFRQIASTDCAYLGVYAQGKDNWLVWIANRIQPVDMNSAVLLLDHSGVLKIESKNMEPIILYSSPQPSNNNTVATLMDTGNFVLHPNGTESTVLWQSFDYPTDTLLPGMKLGVNHKTGHNWSLVSSLTGSNWSLGAFTLEWEPRRRELIIKRRGQLCWTSGELGNNNGFMHSTYYTIVSNENESCFTITRSNKGLTIWTLLETGQLINRKGVDVARADMCYCDGFTDYYDDGTGCKFLHLNSTEGSNFASGGEKFYILMAKNHHKGTKKWIWIILIVAALSVISAFVLYLALKKRKLRFEEKRRKGMQTNEMADLATSNSFYDVRDLEDELKERQDLKVFNYTSVLSATNDFSTENKLGQGGFGPVYKGILTNRQEIAIKRLSKTSRQGIVEFKNELMLICELQHINLVQLLGYCIHEEERILIYENMPNKSLDFYLFDCTRSLLLDWKKRFNIIEGIAQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGLARMFMQQESTGNTSRIVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRRNTSFYDADPDHPLNLIGHAWELWNEDVSLKLIDPSLNDSFDPDEVKRCIHVGLLCVEHYANDRPTMSNVHINVIK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02422 685 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 486 685 - -
Pumo10g02422 685 ProSiteProfiles Protein kinase domain profile. 410 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02422 685 Gene3D Phosphorylase Kinase; domain 1 373 484 - -
Pumo10g02422 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 133 680 - -
Pumo10g02422 685 SUPERFAMILY Protein kinase-like (PK-like) 394 680 IPR011009 -
Pumo10g02422 685 SMART serkin_6 410 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02422 685 Gene3D Transferase(Phosphotransferase) domain 1 486 685 - -
Pumo10g02422 685 SMART blect_4 40 159 IPR001480 -
Pumo10g02422 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Pumo10g02422 685 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 184 IPR036426 -
Pumo10g02422 685 Gene3D - 25 156 IPR036426 -
Pumo10g02422 685 Pfam D-mannose binding lectin 83 183 IPR001480 -
Pumo10g02422 685 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 375 485 - -
Pumo10g02422 685 Pfam Protein tyrosine and serine/threonine kinase 412 680 IPR001245 GO:0004672|GO:0006468
Pumo10g02422 685 ProSiteProfiles Bulb-type lectin domain profile. 26 155 IPR001480 -
Pumo10g02422 685 CDD STKc_IRAK 416 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02422 Pumo-Chr10 37398174 37401467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02422 386 679 Receptor kinase-like Gene Family AT4G11480 57.823 8.45e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02422 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02422 - - vun:114168194 746.888