Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02419 ATGGATAACAAGACTAAACCTTCAAGCAATGATACAATCCTAGTACGTGAAAAATTCACTTACCTGAGCATATATGTCAAAGACGGTGGGTGGATAGTGTGGGTTGCTAATAGAAACCAACCTGTCGATCCAGATTCTGTGGTTTTTTTACTTGATCCCTCTGGTGTACTAAAGATAGAATCCAAAGATATTGAACCCATCATCCTTTACTCTTCACCACAACCAACCAACAACACTGTGGCCGCTTTGTTGGACACCAGCAACTTGGTGTTGCAACAACTTCACCCCGATGGGACTAAGAGCGTGTTGTGGCAAAGTTTTGATTACCCTAGTGATACTTTGCTCCCTGGGATGAAGTTAGGTGTTAACTTCAAAACTGGTCGCAATTGGTCACTCGTTTCGTTCCTGAGTACATCAAATCCAACACTCGGAGCATTCGGGCTTGAATGGGAACCCGGAAGAAGAGAATTGATCATCAAGCAACGAGGACGGTTGTGCTGGGCAAGTGGCGGACTGAGAAACAATGGATTCACGCATTACACTATTGTCTCAAGCGAAAATGAAAGCTACTTCACAATTACAACTTCAAATGAAGAGTTTACAAGATGGGTACTATTGGAAACTGGGCAGTTGATAAATCGGAATAACGGCGATGACAACGTTGCAAGGGCTGATATGTGTTATGGGTACAACACAGATGGAGGGTGCAAAAAATGGGAGAAGATACCCACCTGCAGGCATCGTGGTGATGCATTTGAGATCAAGCTAGGTTATCCCAATGCCGCAAACTTGAGAAGCAATGTGGCAAATTCGAGTTATGGCGAAAGCGATTGCAAGGCTATTTGCTGGAGAAACTGCAGTTGTGTTGGATTCAAAGAATATTATGATGATGGAAGTGGTTGCATTTTCTTTCATTCGAATTCAACGGAAGGTACTAATTTAGCTAGTGGGGGCATAAAGTTTTACATGCTGACAAAGAACACCCATCACAAAAAAACGGAGATTGAGATACTTGATTTAACTACTTCAAATAGATACTCAGGTATCGAAGATCTTCAAGGTGATTTAAAGAGGGAACATGATTTAAAAGTATTTAACTATGCATCAATTGTGGCCGCGACCAATGGTTTTTCACCTGAAAATAAGTTAGGACAGGGAGGCTTTGGACCCGTTTATAAGGGAATCCTGCCAACAGCACAAGAAGTTGCTATAAAAAGGCTTTCAAAAACTTCTGGACAAGGAATGGTGGAATTTAAAAATGAATTAACATTGATATGTGAGCTTCAACACATGAATCTTGTACAACTACTCGGTTGCTGCATTCATAAAGAAGAAAGGATTCTAATTTATGAGTATATGCCAAACAAAAGCTTGGATTTCCATCTGTTCGATCATAGTATAGGCAAGTTACTAGATTGGAAGAAGCGCTTCAACATAATAGAAGGAATTGCTCAAGGATTACTTTATCTTCATAAGTACTCAAGACTCAAAGTGATTCATAGAGATTTAAAAGCTAGTAATATACTTCTTGATGGGAATATGAACCCAAAAATTTCAGATTTTGGGATGGCAAGAATGTTTACACAACAAGGATCCACAACAAATACGAATAGAATTGTTGGAACATATGGTTACATGTCTCCTGAGTATGCCATGGAAGGAGTTTTCTCTATAAAGTCTGATGCATGGGAGTTATGGAATGAAGGTGTGTGTCTACAATTGATAGATCCATCCCTAAGTGAGTCATATGTTCTTGATGAAGTGCAAAGATGTATCCATGTTGGTCTCTTATGTGTAGAACAATATCCATATGATCGACCCATAATGTCAGACATCATATCAATGTTAACAAGCAAGAATGCAACAATTATCTTACCTCGAAAGCCAGCCTTCTATGTTGGAAGGGAGACATTTGATGGGAAAATATCATCTAAAGAGTTCTATACGGATTCTACGACGGCAATCACTACTACCTCAACAGAAATTGAAGCAAGGTGA 1998 0.3964 MDNKTKPSSNDTILVREKFTYLSIYVKDGGWIVWVANRNQPVDPDSVVFLLDPSGVLKIESKDIEPIILYSSPQPTNNTVAALLDTSNLVLQQLHPDGTKSVLWQSFDYPSDTLLPGMKLGVNFKTGRNWSLVSFLSTSNPTLGAFGLEWEPGRRELIIKQRGRLCWASGGLRNNGFTHYTIVSSENESYFTITTSNEEFTRWVLLETGQLINRNNGDDNVARADMCYGYNTDGGCKKWEKIPTCRHRGDAFEIKLGYPNAANLRSNVANSSYGESDCKAICWRNCSCVGFKEYYDDGSGCIFFHSNSTEGTNLASGGIKFYMLTKNTHHKKTEIEILDLTTSNRYSGIEDLQGDLKREHDLKVFNYASIVAATNGFSPENKLGQGGFGPVYKGILPTAQEVAIKRLSKTSGQGMVEFKNELTLICELQHMNLVQLLGCCIHKEERILIYEYMPNKSLDFHLFDHSIGKLLDWKKRFNIIEGIAQGLLYLHKYSRLKVIHRDLKASNILLDGNMNPKISDFGMARMFTQQGSTTNTNRIVGTYGYMSPEYAMEGVFSIKSDAWELWNEGVCLQLIDPSLSESYVLDEVQRCIHVGLLCVEQYPYDRPIMSDIISMLTSKNATIILPRKPAFYVGRETFDGKISSKEFYTDSTTAITTTSTEIEAR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02419 665 Gene3D Transferase(Phosphotransferase) domain 1 453 625 - -
Pumo10g02419 665 ProSiteProfiles Protein kinase domain profile. 377 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02419 665 Gene3D - 2 108 IPR036426 -
Pumo10g02419 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Pumo10g02419 665 Pfam PAN-like domain 268 307 IPR003609 -
Pumo10g02419 665 SUPERFAMILY Protein kinase-like (PK-like) 362 632 IPR011009 -
Pumo10g02419 665 SUPERFAMILY alpha-D-mannose-specific plant lectins 32 133 IPR036426 -
Pumo10g02419 665 ProSiteProfiles Bulb-type lectin domain profile. 1 104 IPR001480 -
Pumo10g02419 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 104 643 - -
Pumo10g02419 665 Gene3D Phosphorylase Kinase; domain 1 341 452 - -
Pumo10g02419 665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 453 544 - -
Pumo10g02419 665 Pfam Protein tyrosine and serine/threonine kinase 380 564 IPR001245 GO:0004672|GO:0006468
Pumo10g02419 665 SMART blect_4 5 110 IPR001480 -
Pumo10g02419 665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 342 452 - -
Pumo10g02419 665 Pfam D-mannose binding lectin 32 134 IPR001480 -
Pumo10g02419 665 SMART serkin_6 377 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02419 665 ProSiteProfiles PAN/Apple domain profile. 245 326 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02419 Pumo-Chr10 37171247 37178403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02419 365 632 Receptor kinase-like Gene Family AT3G45860 51.987 1.09e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02419 PK_Tyr_Ser-Thr 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02419 - - gmx:100794677 899.042