Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02407 ATGGGGGAAGAAGAGAAAGAAGAAACGACAACGTTTAAGGGATTGGGCTTGTCTGAGCCGTTGGTTGAAGCTTGTGAGAAATTGGGTTGGAAAAACCCGTTAAAGATACAAGCAGAAGCGATTCCCCTTGCACTAGAAGGAAAAGATGTGATTGGACTTGCTCAAACGGGTTCTGGCAAGACTGGAGCTTTTGCTCTTCCCATACTACATGCCCTCTTAGAAGCACCACGCCCAAATGATTTCTTTGCTTGTGTGTTGTCTCCGACAAGAGAGCTTGCGATTCAAATTGCTGAGCAGTTTGAAGCTCCAGGTTCTGAGATTGGCGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTTCAGCAATCCATCAAGATAGCTAAGCGACCTCATATTGTTGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAACGAGATTTTACAACTGATTCCTCGTGAGCAGAGAACGTTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTGAGAAATCCTGTGAAGATTGAAGCAGCTTCTAAGTATTCCACTGTTGACACACTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGATTGTTACCTTGTATACATTCTTACTGAAATGGCTGGAAGTACATCAATGGTGTTCACACGTACATGTGATGCAACCCGGCTTCTGGCTTTGATTCTTAGGAATCTTGGTCTAAAAGCCATCCCAATCAATGGTCATATGAGCCAGTCAAAGAGACTAGGAGCCTTGAATAAGTTTAAGTCTGGGGAGTGCAATATTCTCCTTTGCACTGATGTAGCTAGCAGAGGACTCGACATTCCAACAGTCGATGTGGTGATTAACTATGACATTCCCACAAACTCTAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCCGGCCGCTCTGGGGTTGCCATTTCTGTTAGGCAAGAAAATCAACCAAGGGTCTTACGAGTCTATTATAGGAAGAAAAAGAATGCCCATTAA 1050 0.4429 MGEEEKEETTTFKGLGLSEPLVEACEKLGWKNPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEAPGSEIGVKCAVLVGGIDMVQQSIKIAKRPHIVVLDEADRLLNEDFEESLNEILQLIPREQRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISVRQENQPRVLRVYYRKKKNAH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02407 349 Gene3D - 135 197 IPR027417 -
Pumo10g02407 349 SMART helicmild6 240 321 IPR001650 -
Pumo10g02407 349 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 132 338 - -
Pumo10g02407 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 337 IPR027417 -
Pumo10g02407 349 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Pumo10g02407 349 Gene3D - 198 348 IPR027417 -
Pumo10g02407 349 SMART ultradead3 29 204 IPR014001 -
Pumo10g02407 349 CDD SF2_C_DEAD 201 328 - -
Pumo10g02407 349 Pfam Helicase conserved C-terminal domain 216 321 IPR001650 -
Pumo10g02407 349 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 349 IPR001650 -
Pumo10g02407 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 189 IPR014001 -
Pumo10g02407 349 Pfam DEAD/DEAH box helicase 35 135 IPR011545 GO:0003676|GO:0005524
Pumo10g02407 349 Gene3D - 1 134 IPR027417 -
Pumo10g02407 349 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 135 143 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02407 Pumo-Chr10 36679385 36689822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02407 7 339 Eukaryotic Initiation Factors Gene Family AT3G19760 29.086 1.18e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02407 K14777 - gmx:100775796 593.193