Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02402 ATGAAGGAGGGTGGTAGAAAACACGGTGCAATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGATGCGCACAGGATTGTGTGTTTGCTCCTTATTTCCCTGCAGATGAGCCCCATAAGTTTGCCAGTGTGCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAATTACCAGAGCACCAACGAAGTGATGCGGTTAGTTCAATGGTATATGAAGCCAATGCAAGGGTAAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTTTTACAAACCCAGTTGGCACTGGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAAGTGTCATCAACTTCCTCTGATGATGAACACAGACCAGTGCCTGCAGCCTCCAATATTTCATCCTCAGAGAACTTATCTCCATCAAGTAGACTCACCACGTCCCTTTTTGCTATGGACATGGGAGAGTCCTTGTGGTCATGTTAA 504 0.4762 MKEGGRKHGAMSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQVSSTSSDDEHRPVPAASNISSSENLSPSSRLTTSLFAMDMGESLWSC 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02402 167 Coils Coil 92 112 - -
Pumo10g02402 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 134 - -
Pumo10g02402 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pumo10g02402 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pumo10g02402 167 MobiDBLite consensus disorder prediction 119 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02402 Pumo-Chr10 36302810 36307621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02402 1 167 AS2 family AT1G31320 69.540 1.44e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo10g02402 LOB 1.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02402 - - ccaj:109811748 244.588