Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02390 ATGGGTCGTCGAAAGATTGAGATTGCGCCTGTGAAGGATGCCAACACAAGACAAGTCACGTTTTCGAAGCGTCGGACAGGTTTGTTTAAGAAAGCTAACGAATTGTCCATTTTGTGTGGCGCAAAGGTTGCTGTTGTCGTGTTCTCTCCGGGGAACAAGCCTTACTCGTTTGGGCACCCAAGAGTCGACGTTGTTGCCGCCGAATTTCTTCAACAAGAGCACAAATCAAAGAAAGAGCACAAATCAAAGAAAGTCCAACGAGGCCCTAATTCTTTTGATTTTGCTAAGATTGACAAGTTTAATCTACAACTTGCTGATGTGATGAAACAGTTGCATGAGGATGAAGAGAAAAGTGCAGTGCTTGATGAAGCTATCAATCAACGCATAGGGACCCAACTCTCTGAACTTGAAAAATCACATGATTCTCTTGCGGAGCTCGAGTTGAAAGTGAAAAGTCTTCTCAATGATATTGAGACTGCAGAAACATTGATACTCTTTTCACAGGAGGGAGTAGAATTTTCTGTTGCACAAAAGAAAAAGAAGCAAAAAATTATGTGA 558 0.4176 MGRRKIEIAPVKDANTRQVTFSKRRTGLFKKANELSILCGAKVAVVVFSPGNKPYSFGHPRVDVVAAEFLQQEHKSKKEHKSKKVQRGPNSFDFAKIDKFNLQLADVMKQLHEDEEKSAVLDEAINQRIGTQLSELEKSHDSLAELELKVKSLLNDIETAETLILFSQEGVEFSVAQKKKKQKIM 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02390 185 Coils Coil 97 117 - -
Pumo10g02390 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 Coils Coil 136 163 - -
Pumo10g02390 185 CDD MADS 2 60 - -
Pumo10g02390 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pumo10g02390 185 PANTHER MADS BOX PROTEIN 3 146 - -
Pumo10g02390 185 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Pumo10g02390 185 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pumo10g02390 185 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02390 Pumo-Chr10 35354890 35355594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02390 1 168 Type I MADS-box Gene Family AT2G34440 38.596 2.24e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo10g02390 SRF-TF 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02390 - - aprc:113855845 175.252