Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02347 ATGAAAATGGCTTCATCTTCCTCCAACGGCAGTTCCAGCGGAAGCAAGGCGAGGGACATCGACGGCGACCTCGCCGGTTTCGGCTACAAAGTCCGGTCATCGGAGCTGCATCAAGTGGCTGAGAACATGGAGCGTTTAGAGAACGTCATGGACATTGTGAACTCATCCACCAACAACAACATATCTCAACTTGCCTCCGACACGGTCTTCTACAACCCCTCCGACATAGGCTCCTGGGTCGACACGCTCCTCTCCGAATTCGACCAAACGGTGTTGTTGCCCTACGATTTTTCGGATTTACCTGATCTCGACACGGATCAACAAAACCAGAAACCAACGCTGGTAACCACCACCGTGGAAGAAGACTCGGGGATAAGACTCGTCCACATGCTGATGACGTGTGCGGATTCCGTGCAACGTGGCGACCTCCCATTCGCCGGCTCCCTCATCGAGAACATGCAAGGGCTGCTGGCGCACGTGAACACCAACCTCGGCATCGGCAAAGTCGCTGGATACTTCATCGACGCCTTGCGCCGCCGCATCTTCGGGCAAAGCGCGTTCCTAACATCCTCGTCCCCGCACGAGGATGATGTTCTCTACCACCACTACTACGAGGCGTGCCCTTACTTAAAGTTCGCGCACTTTACTGCAAATCAGGCTATCTTGGAAGCCTTCAGTGGCCATGAGTGTGTCCATGTGATTGACTTCAACCTCATGCAGGGGCTCCAGTGGCCCGCGCTGATTCAGGCCCTCGCGCTTCGGCCCGGCGGGCCTCCGCTGCTGAGGCTCACGGGCATTGGGCCTCCCTCGTCCGACAACCGCGACACGCTCCGTGAGATCGGGCTGAGGCTCGCCGAGCTGGCGCGGTCGGTAAATGTTAGATTTGCATTTCGTGGCGTGGCGGCGTGCAGGTTGGAAGACGTGAAGCCGTGGATGCTGCAGGTGAGTCCGAACGAGGCGGTGGCGGTGAACTCCATCATGCAGCTGCACCGGTTACTCGGGTCGGGCCCGTGTTCTGGCGTGGAAACTGTCCTCGGTTGGATCCGAAGTTTGAACCCCAAGATCGTCACCGTTGTGGAACAGGAAGCGAGCCACAACGGAGAAGGGTTCTTGGAGCGGTTCACGGAAGCGTTGCATTACTACTCGACCGTTTTCGACTCGCTGGCGGCGTGTCCGGTCGAACCGGACAAGGCTCTGGCGGAGATGTACCTGCAGAGGGAGATATGCAACGTGGTGTGCTGCGAGGGACCTGGCGCGAGTCGAGAGGCACGAGCCGCTGGCTAA 1284 0.5826 MKMASSSSNGSSSGSKARDIDGDLAGFGYKVRSSELHQVAENMERLENVMDIVNSSTNNNISQLASDTVFYNPSDIGSWVDTLLSEFDQTVLLPYDFSDLPDLDTDQQNQKPTLVTTTVEEDSGIRLVHMLMTCADSVQRGDLPFAGSLIENMQGLLAHVNTNLGIGKVAGYFIDALRRRIFGQSAFLTSSSPHEDDVLYHHYYEACPYLKFAHFTANQAILEAFSGHECVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSSDNRDTLREIGLRLAELARSVNVRFAFRGVAACRLEDVKPWMLQVSPNEAVAVNSIMQLHRLLGSGPCSGVETVLGWIRSLNPKIVTVVEQEASHNGEGFLERFTEALHYYSTVFDSLAACPVEPDKALAEMYLQREICNVVCCEGPGASREARAAG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02347 427 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 415 IPR005202 -
Pumo10g02347 427 Pfam Transcriptional regulator DELLA protein N terminal 21 90 IPR021914 -
Pumo10g02347 427 Pfam GRAS domain family 127 418 IPR005202 -
Pumo10g02347 427 Gene3D - 19 87 IPR038088 -
Pumo10g02347 427 ProSiteProfiles GRAS family profile. 118 427 IPR005202 -
Pumo10g02347 427 SMART DELLA_2 21 102 - -
Pumo10g02347 427 FunFam DELLA protein GAI 19 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02347 Pumo-Chr10 34124891 34126853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02347 20 417 GRAS Transcription Factor Family AT1G14920 44.977 1.56e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo10g02347 GRAS 4.1e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02347 K14494 - gmx:100805968 711.835