Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02346 ATGAAGGATCCAGAGGAGCACCAAGTGAAATCTAGAATGCCTCTTCAGAAATCTTCTTCAGAACGTAGAAGAAGGTGCAGGAGAAGGAGCCAGCAGTGCAAGCCAGAGAAATTGCAAGAAATGGAATTTGATTCACAGCTTGGTTCCTCTGCCACTTGCAAGAGTCTTGTGTTTCATCAAAGGCCTGGCTTTGGCCAACTTGGGACTAAGTGTGTCATCAAAGCCAACCACTTCCTTGCAGATATATCAGTTTCTGACTTGAGCCACTACAATGTTAAAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAGGCTATCATAGCAGAGTTGGTGAGGCTTCACAGGAACACTGACTTAGCCACGAGGCTCCCTGTGTTTGATGGAGGGAGAAACCTTTACACTGCTGGTTTGCTTCCTTTTACATACAAAGAGTTCAATGTAACATTGAGTGAGGATGATGATTTTACCGGTGGTACCAGGGAAAGGGAGTTTAAGGTGGTTATCAAGTTTGCAACTCGTGTTAGCATGCATCAACTACGTGAGCTTCTTAGTGGGAAGCAAGTGAAGAATCCACAAGAAGCACTTAGCGTCTTTGACATTGTGTTAAGGGAGCTTGCGGCTCAGAGTTACGTGTCAATTGGGAGGTTTCTTTATTCTCCGGATGTAAGAAAACCACAGCAGTTGGGTGGTGGCCTTGAATCATGGAGGGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCTTTTATTGAACCACTGCCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATATCCATTCAAAGCCGTTGTCGGATGCGGATCGTGTCAAGATCAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAGAGGAAGGTTAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGGGGCCAGAGATATACCAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGCCAAAGACCCCGTGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTATGAGAATAATCCGTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTTGAGGCTCGAGTTCTTCCGCCTCCATGGTTGAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAACTTCTCACGAAGTGTACAGGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGATCCTGCGATTCCTATATATTCGGCAAGACCAGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGCTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGACAATAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCTCATCGAGAAGAACTCATTCAAGATCTTTTCAGATGTTGGAAAGATCCACAGAGGGGTGTAGTTTATGGTGGTATGATCAGGGAGCTTTTACTATCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAGGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATTCGCAAGGCCTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTTGTTCAAAAACGGCATCACACTAGACTCTTTGCAAACAATCACGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTTGTAGATTCTAAGATCTGTCATCCTTCCGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATTCAGTCCCTAACCAACAATTTATGCTACACGTAA 2538 0.4212 MKDPEEHQVKSRMPLQKSSSERRRRCRRRSQQCKPEKLQEMEFDSQLGSSATCKSLVFHQRPGFGQLGTKCVIKANHFLADISVSDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLATRLPVFDGGRNLYTAGLLPFTYKEFNVTLSEDDDFTGGTREREFKVVIKFATRVSMHQLRELLSGKQVKNPQEALSVFDIVLRELAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDIHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPAIPIYSARPDQVKKALKYVHSAAIDKLDGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02346 845 Gene3D - 622 845 IPR036397 GO:0003676
Pumo10g02346 845 SMART DUF1785_2 212 264 IPR014811 -
Pumo10g02346 845 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g02346 845 Pfam Argonaute linker 1 domain 213 262 IPR014811 -
Pumo10g02346 845 ProSiteProfiles PAZ domain profile. 265 379 IPR003100 GO:0005515
Pumo10g02346 845 SMART PAZ_2_a_3 269 401 IPR003100 GO:0005515
Pumo10g02346 845 Pfam N-terminal domain of argonaute 70 203 IPR032474 -
Pumo10g02346 845 SUPERFAMILY Ribonuclease H-like 542 844 IPR012337 -
Pumo10g02346 845 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 845 - -
Pumo10g02346 845 Pfam Argonaute linker 2 domain 407 451 IPR032472 -
Pumo10g02346 845 CDD PAZ_argonaute_like 264 378 - -
Pumo10g02346 845 Gene3D - 443 616 - -
Pumo10g02346 845 Gene3D paz domain 259 383 - -
Pumo10g02346 845 FunFam Protein argonaute-2 258 384 - -
Pumo10g02346 845 FunFam protein argonaute 10-like 622 845 - -
Pumo10g02346 845 ProSiteProfiles Piwi domain profile. 553 845 IPR003165 GO:0003676
Pumo10g02346 845 SMART Piwi_a_2 553 845 IPR003165 GO:0003676
Pumo10g02346 845 MobiDBLite consensus disorder prediction 1 33 - -
Pumo10g02346 845 Pfam PAZ domain 290 395 IPR003100 GO:0005515
Pumo10g02346 845 Pfam Mid domain of argonaute 462 539 IPR032473 -
Pumo10g02346 845 Pfam Piwi domain 554 845 IPR003165 GO:0003676
Pumo10g02346 845 FunFam Argonaute 10 443 616 - -
Pumo10g02346 845 SUPERFAMILY PAZ domain 260 419 IPR036085 GO:0005515
Pumo10g02346 845 CDD Piwi_ago-like 423 845 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02346 Pumo-Chr10 34037324 34044508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02346 58 845 Eukaryotic Initiation Factors Gene Family AT5G43810 75.949 0.0 1309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02346 10 34037324 34044508 Pumo10g02346 10 34037324 34044508 ECH
Pumo4g01119 4 14327780 14346131 Pumo10g02346 10 34037324 34044508 PCT