Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02345 ATGGCATCACAAGCAGAACTAAGCATGGATTACAAGCCCTACAGCTATTCCACACTGCTGAAATCATTTGCAGATCAAACTGATCAGACCTACAAGCTAGAAGAGTTTCTTTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAAGCCTTCAGATCAAACCAAGGAACAAGGCCAGTGCTGGAAGAATTCATACCCATAAGGCATCCAGACTCTCAAGAAATTAGCACTGAGAAGGCATCAAACATATCTTCTGACAAGGCGAATTGGATGACATCAGCTCAACTATGGAGCCAAGCCAGCGAAGGAATAACCAAACCACAATCCACAATCACATCATCACCAAAAGAAGGTGCTGATATTAATGGCTTTGGCATGAGCCCTAAGCTAGCCCTAGGCAACAAACACAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTCGTGCCAAGGATTAATAAGGGCTCTTCCTGAGTTGGCCCTTGCCTCTAATTCTGAGAAAGAAAAGGAGGAGGAGAAGAAATGTGATAAAGAGGCAGAGAAATGTTCCAAAAGGGAGAATAATTCAGGCAAAGGAGGGAGTTGTGAAGGGGTTGTTGTTGATCATCAGGGAAAAAGTGCTGCTACAGTTGCATCTGAGGCACAAACAACAAATGCTTCCACCACCACCACCACAACTAACAGTGCTAGTGGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCTAGTCCAAGTCTACACACAGGAGCACCAGCACCCCAGCTTGTAGTCCTTGGAGGAATTTGGGTGCCACCGGAATACGCCACGGCTGCAGCAGCCGTGGCACACTCCGGTGGCCCCACCCTCTATGGCCCACATCCTACCTCACATGTGCCACCACCACACTACTGTGCAGCCACCCCAATGCCCCAAGAGTTCTATAACTCACCTCCACCGCTGTCGCTGCCGCAGCCACCACATGACCACACCCTTCACCACCACCATTTTCACATGTACAAGACAGCACCGCAGACTCGAAGCTCTCCGGAATCCGATGTTCGGAGCTGGTGGCGAGCGGTCAGGAGAGCATTGAGGATGGGAAGTCGGAGAGTGGAAGCTGGAAAGGAGAGAGTGGAGAGAAGAAAGGGTTGGCAGCACTAA 1380 0.4913 MASQAELSMDYKPYSYSTLLKSFADQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFIPIRHPDSQEISTEKASNISSDKANWMTSAQLWSQASEGITKPQSTITSSPKEGADINGFGMSPKLALGNKHRNGGAFLPFSKERNSCQGLIRALPELALASNSEKEKEEEKKCDKEAEKCSKRENNSGKGGSCEGVVVDHQGKSAATVASEAQTTNASTTTTTTNSASGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHTGAPAPQLVVLGGIWVPPEYATAAAAVAHSGGPTLYGPHPTSHVPPPHYCAATPMPQEFYNSPPPLSLPQPPHDHTLHHHHFHMYKTAPQTRSSPESDVRSWWRAVRRALRMGSRRVEAGKERVERRKGWQH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02345 459 Gene3D - 262 320 - -
Pumo10g02345 459 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 318 IPR006447 GO:0003677
Pumo10g02345 459 MobiDBLite consensus disorder prediction 235 262 - -
Pumo10g02345 459 Coils Coil 33 53 - -
Pumo10g02345 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 320 IPR017930 -
Pumo10g02345 459 MobiDBLite consensus disorder prediction 190 264 - -
Pumo10g02345 459 FunFam Myb family transcription factor 262 320 - -
Pumo10g02345 459 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 367 IPR044787 GO:0003700|GO:0006355
Pumo10g02345 459 MobiDBLite consensus disorder prediction 190 214 - -
Pumo10g02345 459 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Pumo10g02345 459 SUPERFAMILY Homeodomain-like 260 321 IPR009057 -
Pumo10g02345 459 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02345 Pumo-Chr10 33967933 33970994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02345 1 389 G2-like Transcription Factor Family AT2G03500 53.545 8.68e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo10g02345 Myb_DNA-binding 9.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02345 - - gmx:100809196 641.343