Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02320 ATGGCGGAAGCTGAACACACCGATCCCACCTCGCCGGAGCGCGAGGAGGACCAAACCAAAAGCAACAAGAAGAAGCTCCGCAAGAGGAAAAGACCTCACAAGACCGAGCAGAAACAAGAGCAGGAGAAGAAGAACGATGCAAACATCGATAATGCCCAAACACAAACCGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGACACAGAAGTGAACAACAACGTCTCATCCGGAATCATGAGCACCGAGTCTTTCACCTCTCTGGGCTTGTCCGAACCCACCTCCAAAGCCATCAAGGACATGGGCTTCCACCGTATGACTCAGATTCAAGCAAGGGCAATTCCGCCGCTGCTGCTCGGGAAGGACGTGCTGGGCTCGGCGAGGACGGGTGCGGGGAAAACCCTAGCGTTTCTGGTTCCGGCGGTGGAGCTGCTGCACAACGTTCAGTTCACGCCGCGGAACGGGACGGGTGTTGTGGTGATATGCCCGACGAGGGAGCTCGCGATTCAGACGCACGCCTGTGGCGAAGGAGCTGCTGAAGTATCACTCGCAGACGCTCGGGCTGGTCTGAGTTCTTGTTTGATTTGGCAGTGCCTCATGATTGATGAAGCTGACAGGATTTTGGAAGCAAACTTTGAGGATGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTATCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTCTGCTAAACGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAGTCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATACATGGAAAACAAAAGCAACATGCCCGGACTACTACGTTCTTCAACTACTGCAAAGCAGAAAAGGGAATCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAATATGCATTTGATCATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACATTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACACTCCATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAACCCACCTAAGGTGAATCTGAACATAGATAGCAGGTGCTTCAAAGCATAG 1503 0.4578 MAEAEHTDPTSPEREEDQTKSNKKKLRKRKRPHKTEQKQEQEKKNDANIDNAQTQTEEEEEEKEEEDTEVNNNVSSGIMSTESFTSLGLSEPTSKAIKDMGFHRMTQIQARAIPPLLLGKDVLGSARTGAGKTLAFLVPAVELLHNVQFTPRNGTGVVVICPTRELAIQTHACGEGAAEVSLADARAGLSSCLIWQCLMIDEADRILEANFEDEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPSAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNYCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNIMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSRCFKA 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02320 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 253 IPR014001 -
Pumo10g02320 500 CDD SF2_C_DEAD 268 398 - -
Pumo10g02320 500 Gene3D - 192 263 IPR027417 -
Pumo10g02320 500 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g02320 500 Pfam Domain of unknown function (DUF4217) 429 489 IPR025313 -
Pumo10g02320 500 Gene3D - 264 494 IPR027417 -
Pumo10g02320 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Pumo10g02320 500 SMART ultradead3 101 271 IPR014001 -
Pumo10g02320 500 FunFam RNA helicase 264 494 - -
Pumo10g02320 500 Pfam DEAD/DEAH box helicase 196 242 IPR011545 GO:0003676|GO:0005524
Pumo10g02320 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 437 IPR001650 -
Pumo10g02320 500 SMART helicmild6 307 388 IPR001650 -
Pumo10g02320 500 MobiDBLite consensus disorder prediction 53 68 - -
Pumo10g02320 500 PANTHER RNA HELICASE 196 422 - -
Pumo10g02320 500 Coils Coil 42 71 - -
Pumo10g02320 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 199 207 IPR000629 -
Pumo10g02320 500 Pfam DEAD/DEAH box helicase 106 171 IPR011545 GO:0003676|GO:0005524
Pumo10g02320 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 409 IPR027417 -
Pumo10g02320 500 Gene3D - 20 191 IPR027417 -
Pumo10g02320 500 SMART DUF4217_3 428 491 IPR025313 -
Pumo10g02320 500 MobiDBLite consensus disorder prediction 1 77 - -
Pumo10g02320 500 Pfam Helicase conserved C-terminal domain 283 387 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02320 Pumo-Chr10 33444389 33451181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02320 66 406 Eukaryotic Initiation Factors Gene Family AT3G19760 26.330 3.19e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02320 K13179 - gmx:100793807 822.002