Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02315 ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCGAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTGTTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCATCCGAGTCCAATGAAGTCTGTAACAAGGAGGAAAGAAGGACAATTGCACCGGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAGACAATGCAAGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGAGCCATCACTTCCAAGCAGCCAGACGCTGACCAAAGTTTAGAGAGCTAA 471 0.4735 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02315 156 FunFam Negative cofactor 2 beta 6 143 - -
Pumo10g02315 156 Coils Coil 115 135 - -
Pumo10g02315 156 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
Pumo10g02315 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Pumo10g02315 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Pumo10g02315 156 MobiDBLite consensus disorder prediction 137 156 - -
Pumo10g02315 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02315 Pumo-Chr10 33313591 33317847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02315 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 1.53e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo10g02315 CBFD_NFYB_HMF 7.7e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02315 K21751 - gmx:547635 303.523