Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02300 ATGAAAGGCAATTATGAGGCTAATTGCAGACTCCGTGGACCACCAAATTATGTTACCTTAACACAGCATCGTAGTAGCTATCTTTCTCCAACCCAAAATTCGATTTTGAACAATGAAACAATTGAAGAAGATCACGAGAGACACCGTGACCGTGTTTTGACCCATGTGGATTCATCTCAAGTGTTATTAAACTGTATTCCCTTTTACTACTCCAAATTGCACCTTTCCAACAACACTAACAGTCCAAACACTTCATCAAACAGCAACAACAACAATGCTGGAGAAGTGAATGCTCTCCCCGAATTAGACCCAAAGAAGAAGAGGATGTTCTCGAACAGAGAATCTGCTCGCAGGTCCCGAATGCGGAAAAGGCAACAAATTGAGTCCCTTCAGTGTCACCTCGATCATCTTCAGACACTGAATCGCCAACTCTCCGAAAAGATCATTTACTTGCTGGAGTGCAACCAGCAAATCCTCCAACACAATACACAACTCAAAGACAAGGTTTCTTCTCTTCAAGTTGCACTATCCAAGTTGTTAGGTCCTCTGGAACATGTTGATCAGCACCACCACTTCCACACCGGCCTTGTACCCGAGCCTTCTTCAGCTTCCACGTTCCACCAATCGCTAGCTAGTTCTGGAGCATAG 648 0.4414 MKGNYEANCRLRGPPNYVTLTQHRSSYLSPTQNSILNNETIEEDHERHRDRVLTHVDSSQVLLNCIPFYYSKLHLSNNTNSPNTSSNSNNNNAGEVNALPELDPKKKRMFSNRESARRSRMRKRQQIESLQCHLDHLQTLNRQLSEKIIYLLECNQQILQHNTQLKDKVSSLQVALSKLLGPLEHVDQHHHFHTGLVPEPSSASTFHQSLASSGA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02300 215 CDD bZIP_plant_GBF1 105 153 IPR045314 GO:0003700|GO:0006355
Pumo10g02300 215 SUPERFAMILY Leucine zipper domain 105 159 IPR046347 GO:0003700|GO:0006355
Pumo10g02300 215 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 107 122 IPR004827 GO:0003700|GO:0006355
Pumo10g02300 215 MobiDBLite consensus disorder prediction 198 215 - -
Pumo10g02300 215 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 151 IPR004827 GO:0003700|GO:0006355
Pumo10g02300 215 MobiDBLite consensus disorder prediction 100 120 - -
Pumo10g02300 215 MobiDBLite consensus disorder prediction 79 96 - -
Pumo10g02300 215 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 50 182 IPR044521 -
Pumo10g02300 215 SMART brlzneu 100 164 IPR004827 GO:0003700|GO:0006355
Pumo10g02300 215 Coils Coil 127 147 - -
Pumo10g02300 215 MobiDBLite consensus disorder prediction 196 215 - -
Pumo10g02300 215 MobiDBLite consensus disorder prediction 79 120 - -
Pumo10g02300 215 Gene3D - 101 162 - -
Pumo10g02300 215 Pfam bZIP transcription factor 105 162 IPR004827 GO:0003700|GO:0006355
Pumo10g02300 215 FunFam BZIP transcription factor 103 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02300 Pumo-Chr10 32625760 32626407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02300 105 187 bZIP Transcription Factor Family AT5G60830 55.422 6.69e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo10g02300 bZIP_1 1.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02300 - - pvu:PHAVU_009G204300g 223.402