Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02288 ATGCAGGAAATACATTCCATCGGCGGCGGAAGGTTCCTCGGCGGCGGCGACTGGAGGCTGAGGCCGCACCACCAGAACCACCAGCAGCCGCCGCTAAAGTGCCCCCGCTGTGACTCGCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAGGGCGGCGTGCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGGAAATCAAAACGCTCCAACAAGCCCAAAACCAACACCAACAGCAACCCTTCCTCTTCCACGGAAACCGCTCCTGCCACCGCGCCAACACCACTACAACCACCGCCGCCGGAGCTTGAGCACAATTCAAACTCTCACTCCAGCAGCGAAAGTTCCACCTTAACCGTGGCCGCCACGGAGGCGATGTCGGCGGCGCCGACATCAAACAACAACGATTTATTACTTGACAACAATCTTGAGTCGAAGATGTTCGCTAACCCTAATCCTAACCCCTCTTTGGAGCAGGGTGGCATTTTCTCTGAGATCGGAAACTTCACCAGCCTCATCAATTCAAATAGCGAAATATTGGGGTTTGGCTTTGCGAATAATAATAATAATAATAACAACAGCAGCATCCTCGACGCGACGTCGTTTCAGTTCGGTGTTAGTGTTACTCATCCGCATGGGAATGATCAGGTGCATGTGGCACCAGGTGGAGGCCATGGTCAGTGGCAACAACAACAACAGCAGAGTCATCATCAGGAGTTCGGTACGACGTCGTTTCTCGACCACACTGTGCCGCTTGAGTTTTCTTCGCTGCAGCACAAGACTCGGCACCATGGAGGCTTTGGATCGTTGGATTGGCAACCCGGCTCGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAACCTTACTGGACCCACACTCAATGGTCTGATCAAGATAATAATCCCTCTCTCTTTCATCTTTCCTGA 984 0.5335 MQEIHSIGGGRFLGGGDWRLRPHHQNHQQPPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTNTNSNPSSSTETAPATAPTPLQPPPPELEHNSNSHSSSESSTLTVAATEAMSAAPTSNNNDLLLDNNLESKMFANPNPNPSLEQGGIFSEIGNFTSLINSNSEILGFGFANNNNNNNNSSILDATSFQFGVSVTHPHGNDQVHVAPGGGHGQWQQQQQQSHHQEFGTTSFLDHTVPLEFSSLQHKTRHHGGFGSLDWQPGSDQGLFDLPNTVDQPYWTHTQWSDQDNNPSLFHLS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02288 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 250 IPR045174 GO:0003700|GO:0006355
Pumo10g02288 327 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Pumo10g02288 327 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Pumo10g02288 327 MobiDBLite consensus disorder prediction 90 108 - -
Pumo10g02288 327 MobiDBLite consensus disorder prediction 1 33 - -
Pumo10g02288 327 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Pumo10g02288 327 MobiDBLite consensus disorder prediction 76 136 - -
Pumo10g02288 327 MobiDBLite consensus disorder prediction 120 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02288 Pumo-Chr10 32244351 32246726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02288 17 326 C2C2-Dof Transcription Factor Family AT5G60850 39.564 2.27e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g02288 zf-Dof 6.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02288 - - gmx:778116 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02288 10 32244351 32246726 Pumo10g02288 10 32244351 32246726 ECH
Pumo4g01195 4 15242610 15243753 Pumo10g02288 10 32244351 32246726 PCT