Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02262 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGTGATCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGCAAGTGATCAACCACAAACTGAAAATTGGATTCTAGAACATGCAAAGCTGAAAGCAAGGTTGGAGGTCCTACAGAAAAATCAAAGGAATTTTATGGGGCAAGATTTGGATGGCCTAAGTATGAAAGAGCTTCAGAATTTGGAGCATCAACTTGATAGTGCTCTCAAAAACATTAGATCACGGAAGAACCAAGTCATGTATGAATCTATATCAGAGCTTCATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACTCTCGCTAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACAGGCACAACTGGAGCAACGTGGGGATGAAATGGAGCTAACTTCCTCTGCCCTTGTACCTCAACCATTGGAGACCTCAAACATTAGAGGCTCCTCACAAATCAGAGGTGAAGGAGATAATGAAGGAACCCCAACTCCAACCCGAGCTAATGCAATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 735 0.434 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVASDQPQTENWILEHAKLKARLEVLQKNQRNFMGQDLDGLSMKELQNLEHQLDSALKNIRSRKNQVMYESISELHKKDKALQEQNNTLAKKIKEKEKALAQQAQLEQRGDEMELTSSALVPQPLETSNIRGSSQIRGEGDNEGTPTPTRANAILPPWMLRPTNE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02262 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pumo10g02262 244 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g02262 244 Coils Coil 122 145 - -
Pumo10g02262 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 MobiDBLite consensus disorder prediction 199 228 - -
Pumo10g02262 244 Coils Coil 158 195 - -
Pumo10g02262 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pumo10g02262 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g02262 244 Coils Coil 88 108 - -
Pumo10g02262 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 MobiDBLite consensus disorder prediction 187 244 - -
Pumo10g02262 244 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pumo10g02262 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Pumo10g02262 244 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pumo10g02262 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo10g02262 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02262 Pumo-Chr10 31566491 31578624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02262 1 203 MADS-box Gene Family AT1G26310 63.768 4.36e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo10g02262 K-box 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02262 K09264 - gmx:100816836 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01203 4 15303348 15310546 Pumo10g02262 10 31566491 31578624 ECH
Pumo5g00676 5 13175548 13181244 Pumo10g02262 10 31566491 31578624 ECH
Pumo10g02262 10 31566491 31578624 Pumo10g02262 10 31566491 31578624 ECH
Pumo4g01202 4 15282889 15297133 Pumo10g02262 10 31566491 31578624 PCT