Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02261 ATGGAGTCTTGGAGCTATGTTGCTGAGGAGAAAGGGTATGTCTCCAATGAGGCACTTTCCCCTCCCAACACACTTGGGAGGAGCAAAGGTTCCTTATTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGCTTTGGGTCAGCAAAATGTTGAGGGTCAAGGTTTTGAGGAGTTGGGGTTTCCAGGAATGTTGGGGAAACAGTTGTGTGGTGGTGATCCTATTGGTACTACTGTTCAGAGCAGAAAGGTGGAAGATGATGTTGTTGACTGCAGAATCACTAGTCCTAGTCCTAGTCCTGTTGTGGCTGCCCCAAATGCATTTTCTTCAAGGGAGGACTTCAATTCCAAGCTTTCAAACTCTCTTGGGGACTCTAATGGTGGCAATTCACTCATTGATTTGAAGCTGGGTAGGTTTGCCGACCATGGAGATGCCATGGTTCCAACATTTTCCAAGGGAGCCCCCATTTTGTCTTCGTCCGAGTCGTCGACGCCGCCAAAGAGGGTGAGAGCTTCAGGGGTCCATTCTCAGACTGCTCACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAACGTAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGCCGAAGAAAGCCTCAAGTGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCAGGAGACTATGCTAACATCATCTTTTGTCTGCCAAGAGATACTCCCCAGTGGAGTATTGTCTTCTGAGAAATATGGAACAAGTGATTGGTGGAGACCTATCAAAGCTGAAGACAGCACCAGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTATTACCAATGGACATCCTCAGTCAAGATCTTTATTTCCTTCATATAGCGGAAAACAACTTCCATTTCTTCACGAAAATGGTGCTACATCTGCTACAGGAAACGTCTTCTCTGAAAACAATAATAACCAATATCATCCACCTTCCCTTGGTGGCCAAAATTCCGGGTCACAATCACTATTCCAGGACACCTCCATAGGAAGTGAGGACTTCAATGTTTTCGACACAGAATCAGCGGTTCAAGGACTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCATGGCTCGCTCGATGGTTCTTCCAAGCAGCCATAGCCATTACAGCATGAGTCAGGTTTCTGAAAAGATGATGGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGATAGGTTTCCACCAGAATTCAATCCTGCAGATGGAAGTCACCATTAG 1476 0.4573 MESWSYVAEEKGYVSNEALSPPNTLGRSKGSLLGWELKTPCSFSNDMLALGQQNVEGQGFEELGFPGMLGKQLCGGDPIGTTVQSRKVEDDVVDCRITSPSPSPVVAAPNAFSSREDFNSKLSNSLGDSNGGNSLIDLKLGRFADHGDAMVPTFSKGAPILSSSESSTPPKRVRASGVHSQTAHCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFQETMLTSSFVCQEILPSGVLSSEKYGTSDWWRPIKAEDSTSFTFRPLSSIPITNGHPQSRSLFPSYSGKQLPFLHENGATSATGNVFSENNNNQYHPPSLGGQNSGSQSLFQDTSIGSEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARSMVLPSSHSHYSMSQVSEKMMGISSQASSGVSDRFPPEFNPADGSHH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02261 491 SUPERFAMILY SBT domain 183 263 IPR036893 GO:0003677|GO:0005634
Pumo10g02261 491 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 115 468 IPR044817 GO:0003677
Pumo10g02261 491 MobiDBLite consensus disorder prediction 450 477 - -
Pumo10g02261 491 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
Pumo10g02261 491 Gene3D - 175 246 IPR036893 GO:0003677|GO:0005634
Pumo10g02261 491 Pfam SBP domain 185 258 IPR004333 GO:0003677
Pumo10g02261 491 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Pumo10g02261 491 MobiDBLite consensus disorder prediction 362 392 - -
Pumo10g02261 491 MobiDBLite consensus disorder prediction 450 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02261 Pumo-Chr10 31501816 31504784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02261 136 363 SBP-box Gene Family AT1G69170 45.868 1.92e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo10g02261 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02261 - - gmx:100777766 840.491