Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02242 ATGATGATGATGATGATGATGATGGCAAGTTCAAGAGAAGGTCATCAAGCAAAGCAAGAGGGTAATGACACCATTAATGTTGACAAGTTCTCCAAGGCATCTTCCACTTCATCAAGACAATGGTCAGCGTTCAGAAACCCAAGAATTGTGAGAGTGTCACGTTCTTTTGGAGGGAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTTCCCACAGCAATTCAGCTTTATGATCTTCAAGACAAGCTTGGGCTAAGCCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCCACCAAATTTGACATTGACAAACTCCCTCCACTCCAATTCCCTCAGGGGTTTGGTCAATTTCATCATCAACAACAAACCCTACTCCCCTTCCATGATTCAAGTGCTGCCTCTCAGCTCTCTCTTGGACCCTTCTGTGATGCTAGCTCCACTTTTGTGAGGGATGGTGGGGGGATTCAAATCCAAAACCTCATGGCAAAGTCAAGGTATTGGGATAACATAGACTCACTATCAAGATTGAAAGGCAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAGTGAGCAAGAGAATCATCATAATCATCAAGATGGTGTTGTTGGAGGTTACAACAGCTTGCAAGTTTCTACTCAGAGGCTTTTCCCAATGGGTAGTAGTAGCAATACTACTCACTCCCTTTTACCTGGTTTGTTAAACAATCCCATGTCATACAACTCCTACAACTCTGAGCCTTCTAGTTTGTCTTTATCCCAATTTGGAAGCCATGGATTGTTCCCGTCCCAGCAGCAAGTAGATCCCAATCCAAGCAGTGGCAATGGTGTGCAATTCCCATCTTCTTTGCCATTACCATCATCTGGTGGCTCTCAATTATTGTTTGGCTCATCTTCTGCCACACCATCAATGTTCACCACCTATGCTCCATTTATTGCACCCTCAGTGGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCATCAGGTTCTCAAATCTTGCCTCATCACCCTCTCATTCCATCTCTTCACTCTTTCAATTCACATGTCAGCAGACCCTTCCCAGCTGCAGCAGCACCCTTTAGTTCAAAGCTTTTGGATTCAGACAGCAGCAACCGTAGCCAACAAGATAAGGGTAGCACTTCTTGA 1191 0.4442 MMMMMMMMASSREGHQAKQEGNDTINVDKFSKASSTSSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFGQFHHQQQTLLPFHDSSAASQLSLGPFCDASSTFVRDGGGIQIQNLMAKSRYWDNIDSLSRLKGKEAEKGKWIKTSEQENHHNHQDGVVGGYNSLQVSTQRLFPMGSSSNTTHSLLPGLLNNPMSYNSYNSEPSSLSLSQFGSHGLFPSQQQVDPNPSSGNGVQFPSSLPLPSSGGSQLLFGSSSATPSMFTTYAPFIAPSVDNDPRQFNHIQFLNSSGSQILPHHPLIPSLHSFNSHVSRPFPAAAAPFSSKLLDSDSSNRSQQDKGSTS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02242 396 Pfam TCP family transcription factor 58 182 IPR017887 -
Pumo10g02242 396 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g02242 396 MobiDBLite consensus disorder prediction 377 396 - -
Pumo10g02242 396 MobiDBLite consensus disorder prediction 378 396 - -
Pumo10g02242 396 MobiDBLite consensus disorder prediction 270 294 - -
Pumo10g02242 396 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 321 IPR005333 GO:0003700
Pumo10g02242 396 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02242 Pumo-Chr10 31210610 31212137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02242 42 326 TCP Transcription Factor Family AT5G60970 43.709 2.57e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo10g02242 TCP 4.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02242 - - gmx:100804574 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01215 4 15520163 15522128 Pumo10g02242 10 31210610 31212137 PCT