Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02228 ATGCAGCCACCCAAGGAAGATCTTGAGGTTGAACCATGCGATATATGTGGTGATCGTGGTTCGACTGAAAAAATTGTTACTTGCTCTAAATGCAACATAAACCGACATGGTTATTGCATGGGAATGAATACCACAATAATTCCTAAAGACTGGCTTTGTGAGCCTTGCCAATCCAAGCATGTTTCAACTTCACCATGTAAAGTGAATCAGGATATTGGCTCATGGGCTTCTAAAAGGCAACGAGGTGTCAAAACAGGAAAAGTGAAGTTCCTTAACTTGGATGAAGTCATTAGACTTTCTTCCCAGAAGGCTTCTGCTGTATCCAAAAATGCTACTTTCTCCCTAACTCCAAAATCAAATCCTCAAATTTCACCTCCTAAAGTACTTGGGAAGTTTCCAAGAAATGATGAAGTACACAAGAAGCCAATGACTAATCAAAATGCTTCTTGCTCGTTAGCAAAAAGACCAACAAAGGAGTGTATAGGAGAAAATCAGCAACCCCTTGGTGGAGTGATAGCTGATAAAAATGTTCAAACCCATAATCCTAAGAAAGAAAAGCCTACAAACGGGGCACCTTTTGAAGCTTTATCAGCAAGAAAATCTTCCCCTATTGTTGGTTCAGGCTGTATACATAGTGCTGATGCTGAATGTAACCAGTCTGATGTTGCAAAAAGTGACCTTCAGAGTTTTCAGAAAAACTTAAACCTTCATCGTAAATTTTTACCCTCTTCAATTCCTGCTTGGAGGGGTCAAATCCAAATTCTTCAAACTGCTGCATCTAAAGAAATTTATGATGGGTTTGAGGCCCAACCACCGTGCATTGTTAACAGGAAAGCATATAAATTTTCAAGAGAAATGCCATCAGTCCTTCAACTGGAGTCACTTCCTGCATTGAATGTCTTGACTGATGTATTCCGCGATGATTCTCCTAAGCTTCAGGATATTGCATTGTACTTCTTTCCATCAGAACATACTGAGAGGTCCAGAAAGAACCTGAATAGCATATTGAAATTTATGAATGCTGAGAAATCAATGTTGAGAAGTTATATTGATGGAGTGGAGTTGCTGGTATTCACCTCAAATCAACTTGACATGGACTCAAGGGGTGCTATTGCTGCAGCAAACGCTGGACATTTCCTGTGGGGAACCTTTCGCAAAAAGAAAATTGATAAAGCTATGGAAAGAGTACCTGACATGGAGCCAGTTGATATGGACATCGATATGATTGGAGGAAAGGACGTGGTGGGGAGAGTTGATCACGTTGAAAAAGATAAACCCAAGAGTGCCTCTATGACAGAGCATTATAACAAACTGGATGTTCCGCCAGGTTTCGAAGCATTTGCCAAAATGTCTTCAAGAAAAATTGCTGCAGAAGATTAG 1380 0.4022 MQPPKEDLEVEPCDICGDRGSTEKIVTCSKCNINRHGYCMGMNTTIIPKDWLCEPCQSKHVSTSPCKVNQDIGSWASKRQRGVKTGKVKFLNLDEVIRLSSQKASAVSKNATFSLTPKSNPQISPPKVLGKFPRNDEVHKKPMTNQNASCSLAKRPTKECIGENQQPLGGVIADKNVQTHNPKKEKPTNGAPFEALSARKSSPIVGSGCIHSADAECNQSDVAKSDLQSFQKNLNLHRKFLPSSIPAWRGQIQILQTAASKEIYDGFEAQPPCIVNRKAYKFSREMPSVLQLESLPALNVLTDVFRDDSPKLQDIALYFFPSEHTERSRKNLNSILKFMNAEKSMLRSYIDGVELLVFTSNQLDMDSRGAIAAANAGHFLWGTFRKKKIDKAMERVPDMEPVDMDIDMIGGKDVVGRVDHVEKDKPKSASMTEHYNKLDVPPGFEAFAKMSSRKIAAED 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02228 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Pumo10g02228 459 SUPERFAMILY FYVE/PHD zinc finger 6 59 IPR011011 -
Pumo10g02228 459 Pfam PHD-finger 13 58 IPR019787 -
Pumo10g02228 459 ProSiteProfiles Zinc finger PHD-type profile. 10 59 IPR019787 -
Pumo10g02228 459 SMART PHD_3 12 57 IPR001965 -
Pumo10g02228 459 PANTHER - 10 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02228 Pumo-Chr10 30870199 30875950 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo10g02228 PHD 3.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02228 - - gmx:100812587 722.235