Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02216 ATGGAAGAAGATCAAGAAGTGAAACACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGAAGATCCTTGGGAGGCCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAGCTTTCATCTTTGAACAATGGTGGAGGAGACATAGGAGCAATGGGCTCTGAAGGTGGAACAAACAATGGAAATGGAGGGTATGGTCTGAGAGAGAATCCTAAGAAGACTTGGAGGTTCGCGGATTCGAGTGAGGACAACAACAACACTACTTTGGTGTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTTTCCCAAAACAACAACAACAACAACAACAGCAGCAGCTTATTGGAGGATCAAGATTCGTGGACTGATAATGCTAGCCAGAAGATGGTGGTGATGGATGATAGCCACTCTGAGAATGAAGCCACTGCTCCGAATCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACATGGCCCCATCAACTTCTTCTGTGTCCCTTGTTTCTGAGGCTGAGCAGGAGCAGGAAGAGGTTGCAATGAGTTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGTGTGGTCTCAATTCTGTCAACTCAATGCACTTTGAATCTCCTTCTTTGGTTCCTACTAATTTGGATTCTAAGGTTGAGGGCAAGAGGGTTATCTCCAATAATGGTTCTGAGAAAAAGGTTGCCAAACCAAGGGATATGAAGTGGGAGTTTGGCAATTTGGATGGTTCAAATCTCAACTCCAAAGGGAAAATGAGTTCAGAACTTTTGGGTACTGAGAGTCCAGGAAGTGGATTTGGGGTCAGCAAGACCATGGTTTCTAATTCTGCATTTGAGGACAATGGAACAGATGATATAAGTAACAATAAGTACACTTCAATCAAGGCAAAGTTTATGGATTCTGAGTTGAAGTCAAGTTCTTTGAAGAGTTGGGGGAACAACAAGGCTCCAGAAGGTGAATTCAGCAAAAGCTCCAATAAGAGAGGGAAGTTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAGCTGGAAGCAGACCTCTCCCCTGACCCAACAACAACAGAAAGTAAGCTCCTGAAGAATGAGTATGTGGAAGAACATGAAATGGATACTACTGTTACTACTACTATTACTACTACTATTACTACTGGTTTTGACAATGAGGCAGAAACAGTGAGAGATTCCAAGAAGGGGAAAGGGCATGAGTGTCCAATTTGCCTCAGGGTTTTCCCATCTGGCCAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGGCTGGTGGGTCTGAGAGTGCTACTAGAAACTGTCAAAGTCAAACAATTGTACTTGAGGAAGCAGCACCAGAAATTAGGGACTTTTTTGACCTTAATCTTCCTGCTTCTACAGAGGAAGAGGGTAATAGCCATGGCCATGCTGAGCCTTACAGACCATGGTGGGTAGTAGGAGGCAGCCACAAGCAGGAGGCACTGGGCAAACTACATGGTGCAGCTTACAAAACGGCACTTGTTGGCAGAGCTAGAGGGTTTGATCACTGGCACAGTATGGGGGAGGCTTTGATTTACTTAGCTGTAGTAGCTGGCATTGTTGCACTGCATTGTCAACTAGCACAAGCAATTAACTGCATCTGA 1794 0.4543 MEEDQEVKHVCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSSLNNGGGDIGAMGSEGGTNNGNGGYGLRENPKKTWRFADSSEDNNNTTLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNNNNNNSSSLLEDQDSWTDNASQKMVVMDDSHSENEATAPNRRRRSKRRRTRYMAPSTSSVSLVSEAEQEQEEVAMSLMMLSRDVSPWCGLNSVNSMHFESPSLVPTNLDSKVEGKRVISNNGSEKKVAKPRDMKWEFGNLDGSNLNSKGKMSSELLGTESPGSGFGVSKTMVSNSAFEDNGTDDISNNKYTSIKAKFMDSELKSSSLKSWGNNKAPEGEFSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADLSPDPTTTESKLLKNEYVEEHEMDTTVTTTITTTITTGFDNEAETVRDSKKGKGHECPICLRVFPSGQALGGHKRSHHLAGGSESATRNCQSQTIVLEEAAPEIRDFFDLNLPASTEEEGNSHGHAEPYRPWWVVGGSHKQEALGKLHGAAYKTALVGRARGFDHWHSMGEALIYLAVVAGIVALHCQLAQAINCI 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02216 597 Pfam C2H2-type zinc finger 456 479 - -
Pumo10g02216 597 Pfam C2H2-type zinc finger 98 119 - -
Pumo10g02216 597 Pfam C2H2-type zinc finger 356 380 - -
Pumo10g02216 597 Pfam C2H2-type zinc finger 9 31 - -
Pumo10g02216 597 Gene3D Classic Zinc Finger 353 478 - -
Pumo10g02216 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Pumo10g02216 597 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Pumo10g02216 597 ProSitePatterns Zinc finger C2H2 type domain signature. 358 378 IPR013087 -
Pumo10g02216 597 SUPERFAMILY beta-beta-alpha zinc fingers 356 478 IPR036236 -
Pumo10g02216 597 SUPERFAMILY beta-beta-alpha zinc fingers 9 118 IPR036236 -
Pumo10g02216 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Pumo10g02216 597 SMART c2h2final6 9 31 IPR013087 -
Pumo10g02216 597 SMART c2h2final6 356 378 IPR013087 -
Pumo10g02216 597 SMART c2h2final6 96 118 IPR013087 -
Pumo10g02216 597 SMART c2h2final6 456 478 IPR013087 -
Pumo10g02216 597 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pumo10g02216 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 356 383 IPR013087 -
Pumo10g02216 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 456 478 IPR013087 -
Pumo10g02216 597 Gene3D Classic Zinc Finger 1 122 - -
Pumo10g02216 597 MobiDBLite consensus disorder prediction 332 352 - -
Pumo10g02216 597 MobiDBLite consensus disorder prediction 387 409 - -
Pumo10g02216 597 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 534 - -
Pumo10g02216 597 MobiDBLite consensus disorder prediction 152 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02216 Pumo-Chr10 30423759 30427090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02216 1 219 C2H2 Transcription Factor Family AT1G26610 40.756 1.69e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g02216 zf-C2H2_6 1.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02216 - - gmx:102662018 872.463