Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02214 ATGTACCCACACCAACAACAACACCATGTTCCTGTTACCTACCAATATATCAACAACTATTTCCCTCAAACCTCTGATTCTGCTATTCATCCTCTAGTCACTAACCCACTTGCAAATTCAACTACCCCTTCTGCTTTCCCTGCTCAAACAACAAATTCTCAAAACTGGACTACTCCTTCTACTTTCCCTACTCAAACAACAAATTCTCAGAACTGGATCCTCAGACATACTGACCCCAGCAGATATGATTACGCTATGGTTCCGTTACAAGACACTGCAACTTCAACTTTTCCCCACACACCGAATATGCAGGCTCTTGTTACGCTTCAAGAAACACCAGCTGCTACTTTTCCTGCCACAATGAATGATGGGTGGTCTCATGCATATGTAACTAATGAAGCTACACTAGTAGGGCCAGAGCAAAGTAGAGTTAATGAAGCTACAATGGTGCCTGAGCAGAGTGATATCCGAGGAGAAGTTACAGTAGGTGCTATAGTCCAGGAGCCAAAGTCAAAGGAACAAAAGATTTTGAATGGTGGATTAAAGTGTTGCGAAATATGCGATGTTAAGTGCACAAGTCAAGATATGTACGAGAAGCATATAGCTGGGAGAAAGCACCGTTCTAAGGTTGCCAGAATGTCAAATAATAGGGTTGGTCCTTCGAATAATCCTGCAAAGAAAATCAAGTCTGGTCAATCTGTATCGTGTGAAGTTTGTAAGTGTGAATGTAACAGTAGCGAAATGTATAATACACACATAGCTGGGAAGAAACACTTAAAAAACATGAAGAAACTGTCAATGTCAAAAATTGAAGCTAGTGTTGATATCACCATTGGAAATACTTCACAACAGCTAGCAAATATGATCATTGGGCCACAAGAAAAGCCAGACTCTGAAAAACCAGAATCACTGAAGGCACCTGAAATGGAGATTGCGACGAAGAAACGCAAACTTATCGAAGGTGGGGCTACAAAAGGTGATGTTACATATTGCAGTATGTGCGATGTGGCATGTAACAGCCAGAAACAATTTGATACTCACCTTACTGGACAAAAACACACTTCAAGGGTAAAGAAGCAACAGGCAGAGTCAAATGGGAACTGA 1104 0.4121 MYPHQQQHHVPVTYQYINNYFPQTSDSAIHPLVTNPLANSTTPSAFPAQTTNSQNWTTPSTFPTQTTNSQNWILRHTDPSRYDYAMVPLQDTATSTFPHTPNMQALVTLQETPAATFPATMNDGWSHAYVTNEATLVGPEQSRVNEATMVPEQSDIRGEVTVGAIVQEPKSKEQKILNGGLKCCEICDVKCTSQDMYEKHIAGRKHRSKVARMSNNRVGPSNNPAKKIKSGQSVSCEVCKCECNSSEMYNTHIAGKKHLKNMKKLSMSKIEASVDITIGNTSQQLANMIIGPQEKPDSEKPESLKAPEMEIATKKRKLIEGGATKGDVTYCSMCDVACNSQKQFDTHLTGQKHTSRVKKQQAESNGN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02214 367 MobiDBLite consensus disorder prediction 347 367 - -
Pumo10g02214 367 SMART ZnF_U1_5 179 213 IPR003604 GO:0003676|GO:0008270
Pumo10g02214 367 SMART ZnF_U1_5 326 360 IPR003604 GO:0003676|GO:0008270
Pumo10g02214 367 SMART ZnF_U1_5 231 265 IPR003604 GO:0003676|GO:0008270
Pumo10g02214 367 SUPERFAMILY beta-beta-alpha zinc fingers 181 213 IPR036236 -
Pumo10g02214 367 Pfam Zinc-finger of C2H2 type 235 258 - -
Pumo10g02214 367 Pfam Zinc-finger of C2H2 type 183 206 - -
Pumo10g02214 367 Pfam Zinc-finger of C2H2 type 330 353 - -
Pumo10g02214 367 SUPERFAMILY beta-beta-alpha zinc fingers 232 265 IPR036236 -
Pumo10g02214 367 Gene3D Classic Zinc Finger 307 362 - -
Pumo10g02214 367 PANTHER ZINC FINGER RNA-BINDING PROTEIN 23 271 - -
Pumo10g02214 367 SUPERFAMILY beta-beta-alpha zinc fingers 327 362 IPR036236 -
Pumo10g02214 367 Gene3D Classic Zinc Finger 221 271 - -
Pumo10g02214 367 Gene3D Classic Zinc Finger 166 216 - -
Pumo10g02214 367 SMART c2h2final6 182 206 IPR013087 -
Pumo10g02214 367 SMART c2h2final6 329 353 IPR013087 -
Pumo10g02214 367 SMART c2h2final6 234 258 IPR013087 -
Pumo10g02214 367 MobiDBLite consensus disorder prediction 42 67 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02214 184 362 C2H2 Transcription Factor Family AT5G61190 26.486 7.61e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g02214 zf-met 9.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02214 - - aprc:113848135 289.656