Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02210 ATGGAACTCACCGAAGAACAACGACGCCAAGTAGAAGCAAACCGCGTAGCAGCGATCGCAAAACGCAAAGCATTCCTAGAATCCAAAGCACAACAACAACCTAATCCCGAAGGAAAAAACAACACCAACACCAACACCAACCCGTGGCAGCTTTTCAAGTGCCAAAAGTTCCCTCTTTCCCCCAAACCCCAACCCCCAAGATTCCTCGCCAGGCTCGAAATATGTTCCCCCGATTCCTTCTCCATAATCCCTCTCCCTCTTCCCTCTTTTCCCTTCCCCGGTCACCAACATTGCCTCACAATTCTAAACTCCACTCTCTCACAACAACACGTGCTGCCGACGCATTACACGCAGACTAGTGAGGGCGAGAAGGTCTGCGTGTTCAAGCTGGCCGAGTACCGCGCCGTGCTGAAGCAGTTAAAGGCCGCTGCGGCGGCAATGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTCGTGGAGCGGCTCTCGCACTCGTTCGCGGCCGGGCGGTGGGTGCCGGTGCGGCCGGAGCACTTGCCCGACGACGAGGTGGACCGCCTGATCGCCAAGCTTCCAAGGATTCTCCTGGACAGGCTGCTGCCTTTCCAGCACGAAGGGCTGAGGTTCGCATTGAGAAGAGGTGCCAGGTGCCTCATTGCGGATGACATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTTGTGGTTTGTCCGGCTGTGTTGCGGTATTCGTGGGCGGACGAATTGGAGCGCTGGCTTCCTTTCTGCTTGCCGGCCGATGTACATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAGCCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAACGTGAATGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTTGATGTGGCTTTGAAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGACCGTACGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGCGATTTAAAATATATCAAAGGCATCCAAGGAAAATTTTTTGCGGATTATTCAAAGGGCGTGCGCTTGGAAGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACACGTGATGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGATAAAAAGGTCGGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTGAATATTGATGCCTCTGAAAGGGAAAGTGAAGACATGCCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCCGGTTTTCGTGAATGGCTTGCCCTCCATCCAATCATTGCAGGGTCAGAGAATGCTTCAAAAATGTTAATTTTTGCTCATCACCACAAAGTTCTTGACAGAGTACAGGAGTTTATATGTGAGAAAGGGATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGACAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAGCTACCACAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGACGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAACGTATTTCTTATTTAGACTCATCTTTGAAAAGTGGTAATAGTGAAGAGCAATCTGCGCGCAAAGATGCGGTAGGTGAAACACGATTGGATAAGCAACCTTCTGCAGTAAACTCAAATGAATCAGAAGCAAATCAAGATGATAAATCTGATGAGGGGACTACTTTTGTTAATAACTCAATTCGGAGTTCTAATATTATGGCTGATAATATTTCCTGCCAAGATTTAGGCAAGGCTTCAGTTCTGGATGGAACTTGTGATGTTGATGTTTTTGATGCTGCGGAGAGATGTCCTGAAAAGAGTTTTGAAGACAGAGATCAATTGCAGGATATGAAATCAGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTAATCCGGTTGAAGCCGATAGACATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTTATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAAACAGGCTCATGATGAGAAACAGAAAACAGAGTTTGTATCTGTCAAGGACAACCCTGCCTATAGGCATGCTCTTCTGGCTTTTGCGGAAGAGTGGAAGAACTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACCTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACACCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTTTATCTACGAAGTGGCCTCGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGGTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAATATCGAATGAGAACTAGCAATAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAATTGCCAATTGGATTGTCATAAGCTTGTTGAGCAAATAAGACCTTTGTCATTGGAAAGGCGGCGAGAGTACATAGAGAAAGTAGCACCAAATGTTGCTAAACGGAAGAACAAGCTTGAGAAGCTTGTGAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTGGAGAATATGAGGACTCTCTGTGTGGCCTGCCATTATGATGTTACTGCCGCACAATGTGCTGAACGACGCATAGAAAGAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTATTAAGGGTGCTGCTGGCACTAACATTAAGGACCATAGGCTTCTCGAGGAAGAAGGGAGTATACTTGAAGATGAGCTTTTAGTTGAGGTTCCTGGCAGTGCCTATTCTTTAGCAGACAGTTAA 3516 0.4434 MELTEEQRRQVEANRVAAIAKRKAFLESKAQQQPNPEGKNNTNTNTNPWQLFKCQKFPLSPKPQPPRFLARLEICSPDSFSIIPLPLPSFPFPGHQHCLTILNSTLSQQHVLPTHYTQTSEGEKVCVFKLAEYRAVLKQLKAAAAAMQVEEIPWATFNVVERLSHSFAAGRWVPVRPEHLPDDEVDRLIAKLPRILLDRLLPFQHEGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRYSWADELERWLPFCLPADVHLVFGHQDNPIYLTRSPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKTEPGEIQAVLDVALKVKRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGIQGKFFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAVGVLNIDASERESEDMPLENLDEPDGKLSYQELGIAKLSGFREWLALHPIIAGSENASKMLIFAHHHKVLDRVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVERISYLDSSLKSGNSEEQSARKDAVGETRLDKQPSAVNSNESEANQDDKSDEGTTFVNNSIRSSNIMADNISCQDLGKASVLDGTCDVDVFDAAERCPEKSFEDRDQLQDMKSVSTTEADDNQSVNPVEADRHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLSSVADDEKQAHDEKQKTEFVSVKDNPAYRHALLAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRKTPLMEISYPLPSDAVWRKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLGNNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQLDCHKLVEQIRPLSLERRREYIEKVAPNVAKRKNKLEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRIERANARKQLKALMNSMKNGIKGAAGTNIKDHRLLEEEGSILEDELLVEVPGSAYSLADS 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02210 1171 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1120 - -
Pumo10g02210 1171 MobiDBLite consensus disorder prediction 28 46 - -
Pumo10g02210 1171 Gene3D - 179 417 IPR038718 -
Pumo10g02210 1171 Pfam Helicase conserved C-terminal domain 506 609 IPR001650 -
Pumo10g02210 1171 Coils Coil 1 21 - -
Pumo10g02210 1171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 372 IPR014001 -
Pumo10g02210 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 423 IPR027417 -
Pumo10g02210 1171 FunFam SNF2 DNA repair protein, putative 174 422 - -
Pumo10g02210 1171 MobiDBLite consensus disorder prediction 768 783 - -
Pumo10g02210 1171 CDD DEXHc_HARP_SMARCAL1 200 423 - -
Pumo10g02210 1171 SMART ultradead3 196 391 IPR014001 -
Pumo10g02210 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 661 IPR027417 -
Pumo10g02210 1171 Gene3D - 994 1129 - -
Pumo10g02210 1171 MobiDBLite consensus disorder prediction 667 713 - -
Pumo10g02210 1171 Pfam SNF2-related domain 216 445 IPR000330 GO:0005524|GO:0140658
Pumo10g02210 1171 CDD HNHc 1063 1103 IPR003615 -
Pumo10g02210 1171 Gene3D - 497 711 IPR027417 -
Pumo10g02210 1171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 655 IPR001650 -
Pumo10g02210 1171 CDD SF2_C_SNF 491 620 - -
Pumo10g02210 1171 MobiDBLite consensus disorder prediction 24 46 - -
Pumo10g02210 1171 MobiDBLite consensus disorder prediction 755 783 - -
Pumo10g02210 1171 Coils Coil 130 150 - -
Pumo10g02210 1171 SMART helicmild6 526 609 IPR001650 -
Pumo10g02210 1171 Pfam HNH endonuclease 1069 1100 IPR002711 GO:0003676|GO:0004519|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02210 Pumo-Chr10 30112529 30142366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02210 514 627 RAD5 or RAD16-like Gene Family AT1G11100 37.719 4.13e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo10g02210 SNF2_N 1.4e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02210 K25861 - gmx:100788690 2120.51