Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02208 ATGTCTAATTATGATGAGATTGCAGAGCTAATATGGGAAAATGGCCAGCTATCCATGCATGGGCTTGGTGGGCTTCAACCTACTACTACCACTACTCAGGAAAAGCCCATATTGAGTAGGGCCCACGATACATTAGAATCTATTGTTCAACATGCCACGTGGCACCGTTATCAACCGTCAAAATTCACTAGGGAAGGGGAATGCCATGCTCCTACTAGTAGTAATAGTAAAAACAACTCCCTCATTAGTGCACCCTATGGTGAGGTTCAACCGGTGTCACCATCGACGAGGAAAAGAACATGGTCCAATGCTAACAAAAACATGTTGGAAGAATGTGACATACTTAGTGGTTGTGCTAGTGCTGGTGCCACCTTTTGTAGGGACAATGATACAACCATGATGACATGGGCATCCCTTGAATCTGGTCGAAGCTTGAAGACTTTGGAGGAAGACTCAGCTTGTCACTGTGGATCGGAAATTCGAGAAGACCAAGACGACAGAGATAGCAAAGCAGAAATAGGCCAAAGTAACTCCAAAAGACGAAGTCGAACTGCTGCCATCCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAGTGTTAGATGAGGTGATAAACTACTTAAAGCAGCTTCAAGCACAGATCCAAGTGATGAACATGACAAGCATGCCCCAAATGATGGTGCCTCTGGCCATGCAGCAGCAGCTTCAGATGTCAATGCTAGCCAGAATGGGTGCTGCTGGGTTTGGCATGGGAATGGGCATGGTGAACATGAACAACATGGCAGCAGCAGCAGCAGCCCTAACAGGTGGCCCAATAAGGTCACTCCCCCAACTCATTCAACCACCAACAACAGCAACAGTTGGAGCTCCACCACCTGCCACTGCCACTGCCACTGCCCCTGTCTTTGTTGCCCCTTCCTTTATGATGCCAGCTTCCATGATTCAAGCACATCCAAAGCCCCAACAACAACCTGCACCCTCAGGCACCATTGCCTCAATTCCTTTGCCTCATCCATATGGTGCTAGCCTCACCCAGCCAATTAATATGGACATCCTCAGCAACATGGCAGCACTTTATCAACAACAGATGAGTCAGAACAATCATCAAGCCTTAAGCAGCAGCATGTCCCAACCACACCATGAGCAAGGCCGTTGA 1221 0.4726 MSNYDEIAELIWENGQLSMHGLGGLQPTTTTTQEKPILSRAHDTLESIVQHATWHRYQPSKFTREGECHAPTSSNSKNNSLISAPYGEVQPVSPSTRKRTWSNANKNMLEECDILSGCASAGATFCRDNDTTMMTWASLESGRSLKTLEEDSACHCGSEIREDQDDRDSKAEIGQSNSKRRSRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASVLDEVINYLKQLQAQIQVMNMTSMPQMMVPLAMQQQLQMSMLARMGAAGFGMGMGMVNMNNMAAAAAALTGGPIRSLPQLIQPPTTATVGAPPPATATATAPVFVAPSFMMPASMIQAHPKPQQQPAPSGTIASIPLPHPYGASLTQPINMDILSNMAALYQQQMSQNNHQALSSSMSQPHHEQGR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02208 406 MobiDBLite consensus disorder prediction 67 99 - -
Pumo10g02208 406 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 394 IPR031066 -
Pumo10g02208 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 243 IPR036638 GO:0046983
Pumo10g02208 406 Gene3D - 177 243 IPR036638 GO:0046983
Pumo10g02208 406 MobiDBLite consensus disorder prediction 64 99 - -
Pumo10g02208 406 MobiDBLite consensus disorder prediction 159 197 - -
Pumo10g02208 406 CDD bHLH_AtPIF_like 183 245 IPR047265 -
Pumo10g02208 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Pumo10g02208 406 MobiDBLite consensus disorder prediction 385 406 - -
Pumo10g02208 406 SMART finulus 189 238 IPR011598 GO:0046983
Pumo10g02208 406 MobiDBLite consensus disorder prediction 159 177 - -
Pumo10g02208 406 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Pumo10g02208 406 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02208 Pumo-Chr10 30035606 30040840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02208 6 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.370 2.74e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02208 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02208 - - gmx:102667566 564.688