Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02203 ATGGCTGGTAGTAGTGGGAAGCAGGAAAATACAATGCCAGTGGAGCTTGCAATCCAGAGGGAGTTAGAATATAGGAAAATTGTAGCAGCATTTCACTCGCGCCCAAATACTAGATTCACTGAAAAGGTTAAATCATCAAATGATGCTTCCTGCCCAAAGCTATTGCCAGGTCCAAGTTCAATCAAATTTTCAAGCCTTTCTGGAAAGCGAAAGGAATCACCAACAACAAGTACTCATCATCCGCATCTAAAACATCAACAACCATGCCATGAAGTTCAGACAGGAGCCTGGGATTTAAGTCTTAATGTTAAATCATCAAATGATGATTCCCTCCCAAAGCCATTGCCAGGACCAAGTTCAAGCAAATTTCCAAGCCTTTTAGTAACTAAGGGGAAGGAATCACCAACAAGTTTTCATCATCCGCGTCTACAACATCATCAACCATTTCATGGAAGTGCCAATCATGAAGCTAAGCCGGATGATTTATACTGCAAAATTTGCCAAATATCTTGCTCAAGTCCATTCAATCTCAAGCAACACTTGAGAGGTCAGAAGCACAAGCAAATTTTGCAAAAGGGCAGAAGCAATCAGATGCATTGGTGTGAAGTGTGTGGCATTCCGTGTATGAATGAAGATTTGCTCAAAATGCACCTTCAAGGCCAAAAGCACAAGGCTAAATTGCAGATGTTGGAAATTACCAAGCAAGGTGTGGAGGCTCCGAATAAGCCTAAATGGTGTGCTCTATGCAAATTATGGTGCAGTGATGAGTTTGCCTTCAGGCTGCACCTTGGAGGTAAAAAGCACAAGAAAGAAAAAGAGAGATGGCTGTAA 831 0.4188 MAGSSGKQENTMPVELAIQRELEYRKIVAAFHSRPNTRFTEKVKSSNDASCPKLLPGPSSIKFSSLSGKRKESPTTSTHHPHLKHQQPCHEVQTGAWDLSLNVKSSNDDSLPKPLPGPSSSKFPSLLVTKGKESPTSFHHPRLQHHQPFHGSANHEAKPDDLYCKICQISCSSPFNLKQHLRGQKHKQILQKGRSNQMHWCEVCGIPCMNEDLLKMHLQGQKHKAKLQMLEITKQGVEAPNKPKWCALCKLWCSDEFAFRLHLGGKKHKKEKERWL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02203 276 SUPERFAMILY beta-beta-alpha zinc fingers 235 275 IPR036236 -
Pumo10g02203 276 SUPERFAMILY beta-beta-alpha zinc fingers 196 231 IPR036236 -
Pumo10g02203 276 Gene3D Classic Zinc Finger 194 234 - -
Pumo10g02203 276 Gene3D Classic Zinc Finger 235 275 - -
Pumo10g02203 276 MobiDBLite consensus disorder prediction 73 87 - -
Pumo10g02203 276 PANTHER ZINC FINGER RNA-BINDING PROTEIN 198 272 - -
Pumo10g02203 276 Gene3D Classic Zinc Finger 144 193 - -
Pumo10g02203 276 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Pumo10g02203 276 MobiDBLite consensus disorder prediction 103 124 - -
Pumo10g02203 276 Pfam Zinc-finger of C2H2 type 245 268 - -
Pumo10g02203 276 Pfam Zinc-finger of C2H2 type 200 223 - -
Pumo10g02203 276 Pfam Zinc-finger of C2H2 type 162 186 - -
Pumo10g02203 276 SUPERFAMILY beta-beta-alpha zinc fingers 155 191 IPR036236 -
Pumo10g02203 276 MobiDBLite consensus disorder prediction 39 90 - -
Pumo10g02203 276 SMART ZnF_U1_5 241 275 IPR003604 GO:0003676|GO:0008270
Pumo10g02203 276 SMART ZnF_U1_5 159 193 IPR003604 GO:0003676|GO:0008270
Pumo10g02203 276 SMART ZnF_U1_5 196 230 IPR003604 GO:0003676|GO:0008270
Pumo10g02203 276 SMART c2h2final6 244 268 IPR013087 -
Pumo10g02203 276 SMART c2h2final6 162 186 IPR013087 -
Pumo10g02203 276 SMART c2h2final6 199 223 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02203 162 268 C2H2 Transcription Factor Family AT5G61190 31.193 1.71e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g02203 zf-met 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02203 - - ccaj:109791260 335.495