Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02202 ATGTCTGGACTCACTTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCATCTGAATTGGGGAAGTTGACTCGCCTTATGGCACTTGATCTTGCCTTCAACAATTTTAGTGGATCAATCCCACCAAGCCTTGGAAACTTGAGTTCTCTCTTATGGCTAACCCTTTCAGATAATTCATTATCCGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCATGTTGTGGCTGAACCTTGCAAACAACAAACTCTATGGAAAATTTCCTTCTGAGCTAACAAGAATTGGAAGGAATGCAAGGGCCACATTTGAAGCAAATAATAGAATCCTTGGGGGAGTTGTTGTTGGCAATAGTGAGTGCTTAGCAATGAGGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATTCCATCCTAACAAGGAAGAATTGTAGGGCCCTTTGGGATAGGTTGCTCAAAGGATATAGTATTTTCCCCATGTGTTCATCTGAGCCCTCTTCTAGATCATCACACATAGCAGGGTATGTTCAGCTAAGTGGGAACCAGTTGAGTGGTGAAATTCCTTCAGAAATTGGGACCATGGTGAACTTCAGCATGCTTCATTTGGGGGATAACAAGTTCACTGGGAAATTCCCTCCAGAGATGGTAGGTTTGCCACTTGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAACTTCCAAGTGATATTGGCAACATGAAGTGTCTACAGGATCTTGATTTGTCTTGGAACAATTTCTCTGGAGCATTTCCCATAAGTTTGGCACACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCTCTCATATCTGGTACAGTCCCTCCTGCAGGACACTTGCTCACTTTTGACAAGGATTCATATTTAGGTGACCCCCTCTTGAACCTCCCAAAGTTCTTTACCATCTCTGATGATAGAAATAGGACTTTACACAAAGTCTTGAAAAGTCCCACAAAATGGTCTTTGGTTTTGGGTCTAGCACTGGCTATCATGGTCTTTGGACTTCTTATCCTTGTAATGTGTTTCTTGGTGAAAAGTCCAAAGGTGGAACCAGGATACCTCATGAAGAATGCAAAGAAGCAAGCACATGATTCAGGCAGCTCCGGATCCTCAACATGGTATTCTGACACTGTTAAGATATTCCGCCTGAACAAGACAGTTTTCACACATGCTGACATCTTAAAAGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACAGTGTATAGAGGGATGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAACTGAGGGGGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTGAGTGGTCATGGATTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTTGTATATGAGTACATAGGAGGTGGAAGCTTGGAGGAGCTTGTGACTGATACAAAAAGGTTGACATGGAAGAGGCGCCTAGAAGTGGCAATTGATGTGGCTAGAGCACTAGTCTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAATGTGTTGCTAGACAAGGATGGGAAGGCCAAGGTCACAGACTTTGGACTTGCTAGAATTGTTGATGTTGGAGACAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGCAAGCCACAACAAAAGGGGATGTGTATAGTTTTGGGGTGTTGGTCATGGAGCTAGCAACAGGAAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTTGAATGGACTAGGAGAGTTATGATGAGTTCTGGAAGACAAGGGTTGGGTCAATCTGTGCTAGTTTTGTTGAAGGGATGTGGAGTAGTTGAAGGTGCAAAGGAGATGGGTGAGTTGCTCCAAGTTGGAGTGAAGTGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTCATTAGGATATACAATCCCATAGGGGACTCAAATTATGGACACATTGTGTAG 2109 0.4414 MSGLTFLTLTYNQFSGPIPSELGKLTRLMALDLAFNNFSGSIPPSLGNLSSLLWLTLSDNSLSGEIPPELGNCSSMLWLNLANNKLYGKFPSELTRIGRNARATFEANNRILGGVVVGNSECLAMRRWIPADYPPFSFVYSILTRKNCRALWDRLLKGYSIFPMCSSEPSSRSSHIAGYVQLSGNQLSGEIPSEIGTMVNFSMLHLGDNKFTGKFPPEMVGLPLVVLNMTRNNFSGELPSDIGNMKCLQDLDLSWNNFSGAFPISLAHLDELSRFNISYNPLISGTVPPAGHLLTFDKDSYLGDPLLNLPKFFTISDDRNRTLHKVLKSPTKWSLVLGLALAIMVFGLLILVMCFLVKSPKVEPGYLMKNAKKQAHDSGSSGSSTWYSDTVKIFRLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGMFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGHGFNWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRLTWKRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMSSGRQGLGQSVLVLLKGCGVVEGAKEMGELLQVGVKCTHDAPQARPNMKEVLAMLIRIYNPIGDSNYGHIV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02202 702 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 688 - -
Pumo10g02202 702 Gene3D Phosphorylase Kinase; domain 1 377 492 - -
Pumo10g02202 702 CDD STKc_IRAK 419 689 - -
Pumo10g02202 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Pumo10g02202 702 Gene3D Transferase(Phosphotransferase) domain 1 494 696 - -
Pumo10g02202 702 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 493 693 - -
Pumo10g02202 702 SMART serkin_6 413 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02202 702 Pfam Protein kinase domain 413 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02202 702 SUPERFAMILY L domain-like 2 301 - -
Pumo10g02202 702 ProSiteProfiles Protein kinase domain profile. 413 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02202 702 Gene3D Ribonuclease Inhibitor 174 320 IPR032675 -
Pumo10g02202 702 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 113 - -
Pumo10g02202 702 SUPERFAMILY Protein kinase-like (PK-like) 392 687 IPR011009 -
Pumo10g02202 702 Gene3D Ribonuclease Inhibitor 1 115 IPR032675 -
Pumo10g02202 702 FunFam Leucine-rich repeat receptor protein kinase MSP1 375 492 - -
Pumo10g02202 702 FunFam Putative LRR receptor-like serine/threonine-protein kinase 171 313 - -
Pumo10g02202 702 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02202 Pumo-Chr10 29971777 29973885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02202 1 94 Receptor kinase-like Gene Family AT5G07280 38.298 1.42e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Pumo10g02202 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02202 - - gmx:100813425 1265.37