Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g02196 | ATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCACACTATTGCCAATAATATTCTTGTTGGCAGTTACTGTGTATTCTCCGGCAGAGGTGGTTTGGTTCACCCTCATACTTCCATTGAAGACTTGGATAAACTTTCTACACTTCTTCAGGTTCCTTTGGTTGCTGGGACCGTCAATCGAGGTAGTGAATTAATAGCCGCCGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCCGTGATTGAGAGTGACTTTCTTTTGTGTAAAACATTTGTTTCTCCTTTGAATAATATACTCTATGATTATGTGTTTCCTGCAGGACTTAAGTTTGAGAATCATAATGAAGTTGGAGTCTTCTCAAAACTTACAAATGCCTATTGTTTGGTTGCCATTGGAGGTTCTAAAAACTTCTACAGTTCATTTGAGGCTAAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATCAGTGGCATTCGTACTGTTGGTCGTCTTTGTGTTGGAAACAAGAATGGGCTACTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTACAGAAGAAAGACTATCTGCTCTAGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCTCACACACTGATGTTGACAAGTATACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTATTGCCAATAATATTCTTGTTGGCAGTTACTGTGTATTCTCCAGCAGAGGTGGTTTGGTTCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCTACACTTCTTCAGGATCCTTTGGTAGCTGGGACCGTCAATCGTGGTAGTGAATTAATAGCCGTCGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCCGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCTCAACCTAGTGCCATTGTGGATGAGATGAGGAAATCCCTCATTGATAGTTATGTCTAA | 1077 | 0.4206 | MIADVLGVEVFRHTIANNILVGSYCVFSGRGGLVHPHTSIEDLDKLSTLLQVPLVAGTVNRGSELIAAGMTVNDWTAFCGSDTTATELSVIESDFLLCKTFVSPLNNILYDYVFPAGLKFENHNEVGVFSKLTNAYCLVAIGGSKNFYSSFEAKLADVIPVVKTSISGIRTVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRTEERLSALGNCIACNDHVALSHTDVDKYTEEMIADVLGVEVFRQTIANNILVGSYCVFSSRGGLVHPHTSIEDLDELSTLLQDPLVAGTVNRGSELIAVGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02196 | 358 | FunFam | Eukaryotic translation initiation factor 6 | 115 | 338 | - | - | |
| Pumo10g02196 | 358 | Pfam | eIF-6 family | 1 | 76 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | Pfam | eIF-6 family | 118 | 316 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | Hamap | Translation initiation factor 6 [eif6]. | 96 | 358 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | SMART | eIF6neu2 | 116 | 317 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | SUPERFAMILY | Pentein | 2 | 95 | - | - | |
| Pumo10g02196 | 358 | NCBIfam | translation initiation factor IF-6 | 119 | 337 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 118 | 357 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | CDD | IF6 | 118 | 336 | IPR002769 | GO:0042256|GO:0043022 | |
| Pumo10g02196 | 358 | SUPERFAMILY | Pentein | 118 | 337 | - | - | |
| Pumo10g02196 | 358 | Gene3D | - | 116 | 338 | - | - | |
| Pumo10g02196 | 358 | Gene3D | - | 1 | 97 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g02196 | Pumo-Chr10 | 29881338 | 29896966 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02196 | 1 | 97 | Eukaryotic Initiation Factors Gene Family | AT3G55620 | 83.505 | 1.51e-51 | 170 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g02196 | K03264 | - | tut:107362863 | 453.751 |