Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02194 ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGTCGGTGACGCCGGCGATTGACCACTCCGGCGTGTTCCGGAGCAATGCGGGTCCGGACGAGCCGGAGCGGAAGGAGAAGAAGAGGAGCAAGAAGAGGACTGAGTCGGGGGGAGCGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGAACGAGTTCGAATTGCGAGTCGCTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGCGAACACGTGGCAGCCGGCTGGCCGGCTTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCCGTGCCGACGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGGACGTATAGCAGTGTGTTTAGGGCCAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGATAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATACTCATTCTGCGACGGCTTGATCACCCCAATATCATAAAGCTTGAGGGTTTGATTACTTCGAGGTTGTCGTGTAGCATTTACCTCGTGTTTGAGTACATGGAGCATGACATTACAGGGCTCTTGTCTTCCCCTGATATCAAGTTCACTGAACCACAGATCAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACCTGCGGGGAGTGATGCATAGGGACATTAAGGGGTCTAATCTTTTGGTGAATAATGAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCAAATTATGTCAATTCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTCACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTCGGTTCGACAGATTATGGTCCAGCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAGCTGCTTGTTGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCTGATGAATACTGGAAAAAGAGTAGACTTCCTCATGCAACTTTATTTAAGCCACAGCAACCGTATGATAGTTGCCTTCGACAGTCCTTTAAAGATTTGCCAGCGTCCGGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGACTGCCACATCTGCTCTATCATCAGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAAGCTTGCCAATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAATCAAGGAAAAAGATTAGTGGACGAGTGCGTGGAACTGAAACAAGAAAACCGTCAAGAAAGCCTCTGGGATTCAATAAACTAGCCCCAGCAGAGGATTTGGTAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTCTCCGCATCCTTGAAGAAGAGAGGACTAAAATAGGTGACAAAGCCCAAAAGCCATCCAGTGGTAAACCTGAAGATGCTTCTCATGTGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGACACTTCATTCCGATCCCATTGTCGAACTATTTCAAGAGGACATATTTTAAATCCATTAGAACCTTGTACATTAAATTCAAGGAATAATTTGGACACCAAAAGCCAGGAAAATAAGGAGTTTTCTGGGGGATGCACCAATTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCAGATGAGTACCACTCGCAAGAATTGTCTATGGCCCTATATCACAGAGAAGATTCAGCATCAAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAAAAGGTTGAATTTTCTGGGCCCTTACTATCTCAAATGCACACAGTTGATGAGCTCTTGGAAAGACATGAGCGCCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGCAAGAAGCTTGGGAAGTAA 2040 0.4814 MGCVSSKQAVSVTPAIDHSGVFRSNAGPDEPERKEKKRSKKRTESGGASQSEVGESGRTSSNCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSRLPHATLFKPQQPYDSCLRQSFKDLPASGVHLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPLGFNKLAPAEDLVSQTQTSQKVNGRSLRILEEERTKIGDKAQKPSSGKPEDASHVKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDTSFRSHCRTISRGHILNPLEPCTLNSRNNLDTKSQENKEFSGGCTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSASKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKLGK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02194 679 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Pumo10g02194 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Pumo10g02194 679 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Pumo10g02194 679 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Pumo10g02194 679 Gene3D Transferase(Phosphotransferase) domain 1 192 431 - -
Pumo10g02194 679 FunFam probable serine/threonine-protein kinase At1g54610 192 432 - -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 412 441 - -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 411 511 - -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 1 61 - -
Pumo10g02194 679 SUPERFAMILY Protein kinase-like (PK-like) 102 400 IPR011009 -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 46 61 - -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 452 467 - -
Pumo10g02194 679 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02194 679 CDD STKc_CDK9_like 109 393 - -
Pumo10g02194 679 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02194 679 MobiDBLite consensus disorder prediction 27 45 - -
Pumo10g02194 679 MobiDBLite consensus disorder prediction 468 492 - -
Pumo10g02194 679 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Pumo10g02194 679 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02194 Pumo-Chr10 29825342 29832546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02194 101 452 Core Cell Cycle Gene Families AT5G10270 48.913 3.53e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo10g02194 Pkinase 7.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02194 - - gmx:100803328 1303.12