Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02193 ATGGCTCTCTTCCGAAGGTTCTTTTACCGGAAACCACCGGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATATTGGGGGGATTGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCCTGGTGCTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATTATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGTCCACTTCTGCCTTTGGAGATGATTCACCACTTCCTTCGGTCAAGCGAGAGCTGGCTGTCTTTGGAGGGGCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTGGCATTTATGCTAGCTGGTCTTCTATTGTACAGGAAACAGTACAATGGTGAACACAAGACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTCTCCACCTTTTATCTCCATTGAATCCGCAACATTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTGTGTGGCCTCCACCAGATACACCCTTATATTTGGATTGCCTCATTCTTAGAGTCCTTCCATTGTTTGATGGTGGAAAAGGTTGCAGGCCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACAGAAGTTCTAAGCTTCTTTTCTCAACTTCAATGGCCCAAAATCATGTTCGCCACTACCTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCATTGTCATGTTCAAGGAGATGTGGTTCTTGAGTGCATACATTTAAGTGAAGATTTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATACTGATGCTGAACCGTGATGAAATTGATATTCTGTGGGATGCAAAGGATCAGTTTCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCGGATGCTGTTATACCTAATCTAACCACATTCAATGTGAGTGGAGATGCAAATGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCGGAAGAGATCTTCAGCAATGTAATTGATGCACAGGAAGTTAAGGGAGATTACGATTCTCTAATGGTTCTTGACAGTGGAGTAGATGATGGAAGTCATAAAGAGCTCTGGAAAGAGTATTCGGATCCCCATACTTTTCAGGATTCCATGTTGGATGATGGGATTCACCAACAGGTTGATGATGTGAAGTACAAGCTTGACAAGAGGGTGGTTTCAGATACTCATGCTGTGAAAGATATTGGTGTGGATTATGGAATCACTTTTATGAAAAAGGAAGTCAGTGTGGATATGCATGATGAGTTGGCAGTTATGCAAAACAAGTATGATGAAGATAACAATGAAACAGAAAAAGAGTTAGAGTCTGAGGAAGGGCAGCAGGTGCTTGAACTTCCTTCTGCTGAAAAGAAACAACTTCCTTCAAACTCAAAGCCAGAGGGAGATACAGTTGTAGCAAAGCAAAAGACTAAACACCAAGAACCACATGGTTTTCAGGCAAAACAAGCAAAACCCAATGCAACAACTAGGTGGATTCCTTCTAATAAGGGTTCTTATCAAGATTCAATGCACGTCTCGTATCCACCATCAAGGAATAATAATTCACCAACTATTCTGTCAAATGTTACCTCTGCAGAGGAGAAAATTACTGATGCCAAAGGAAAATCTACTTCTGGTTCTCATGTCTCTGAAGTAGTTGTTTCTATGGACATGAGAAATGACCTGAAAAGCTGTAAAGGGGATAATTCAAAATCTTTAGACAGCATTGCTGAAGTAGACTCAAACTCTCCACCACCATCATTACTGTCAGTCAGAGAGACATCTCTTCAGTCAGCTACTCAAACACCACAACAGAGCTACGATCAAATGTCACAACTTCATCCTCCTCCACCTTCATTTTTTGGGCAAAGTAGAGGGAGCTTCATAACTCCTTCTACCCATTGGAATTCTGTTTATCCATCCATTGCCATAGTTGGACAAAATACTGGTGCTTCACCTTCTCCTTCCCTGGCTCCTTCCATTGCAAGTGGTGCAATTACATCAAAAGTTTCTGAATTACATGATGCAGTTTCCCTTCCCTGTCCTCCACCATCACTGCCACCACCACCACCACCACCACCACCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCATCCTATGTCATCTACAATTGGAGCTCCACTGCCTCCTCCCTCAATATCTCCAACATCATTTAAAGCTCCACTTCTTGCAACCCCACCTCCACATCCACCTTCACCTCCTTTAAGTAAATCTACACGACTGCCTCCTCCTCCTCCTTTAAGTACTGCTCCACCACCACCACCTCCTCCTTTATGTAGAGCTCCACCTCCACCACCACCTCTTCCTCCATCAAGTGGAGCGCCACCTCCGCCACCACCTCCTTCATTGTCTAGAGCCCCACCTCCCCCGCCTCCACCAACTCGTGGACCACCACCACCTCCAATGCATGGAGGCACACCTCCTCCACCACCTCCAGGTGGTCGAGGCCCACCTACTGGATCTCTGGCTCCTGGTGCTCCTGCTCCTTTTGGACCTCTAGGTGGAGCTCCTTCTCCTTCATCACATGGAACTGATCCAAGAGGGAGAGGGCGTGGACTTGCACGTCCTACAGGGGCTGGTGCTATGGCAGCTCGGAGGTCCTCCTTAAAACCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGACGAATTACAAAGACGTGGAGAACCTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGTGGGCGACGCAGATCTGTTGGATCCAAAACTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACTGGAGATAAGGAGTTTTTGGGGAAGTGTGAAAAGTATTTTTTGGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAATTCAGAGTATTCTCTTTCAAGATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTAAACACGGTGAACTTTGCCTGCGAAGAGGTCCGAAACTCTTTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACAATGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTTTTAAAACTAACTGACACTCGTGCTTCAAACAGTAAAATGACACTCATGCATTTCCTTTGCAAGGTAATAGTCTCAGTTGCATTAAATGAAGATATTATTGGTGGTTTACCTTTCTGTTTCTTTCTATTTGAACTCCAGGTCCTAGCTGAAAGGTTTCCCGGACTCCTTGATTTTCACCTTGACCTTGTTAGCCTGGAAGCAGCCACTAAGATACAATTGAAATCATTAGCAGAAGAAATGCAGGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGCTGCATCTAAAAATGATGGCCCTGTGTCTGAAGTTTTTCGTAAGACATTGAAGGAATTCATTGCTGTTTCAGAGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCCCGTTGTCCTTTCGAGCAAGTTACTGTAACTCTCTTAAATTTTACAAGGTTGTTTCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAAAAGAAAGCGGAGAAAGAGGCTGAAATGGAGAAGGCCAAAGGCATTAACTTGATAAGGAAGAGTGGAAAATATGAAGAAGAAGAAGAAGAAGAAAGCTGA 4095 0.4388 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYIGGIVAQLQDHYPDASFLVLNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPRELLHLLSPLNPQHSHLRYLQYISRRHLGSVWPPPDTPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPSNRSSKLLFSTSMAQNHVRHYLQAECMLVKIDIHCHVQGDVVLECIHLSEDFVREEMMFRVMFHTAFVRSNILMLNRDEIDILWDAKDQFPKDFKFEVLFLDADAVIPNLTTFNVSGDANDTECASPEAEEFYEAEEIFSNVIDAQEVKGDYDSLMVLDSGVDDGSHKELWKEYSDPHTFQDSMLDDGIHQQVDDVKYKLDKRVVSDTHAVKDIGVDYGITFMKKEVSVDMHDELAVMQNKYDEDNNETEKELESEEGQQVLELPSAEKKQLPSNSKPEGDTVVAKQKTKHQEPHGFQAKQAKPNATTRWIPSNKGSYQDSMHVSYPPSRNNNSPTILSNVTSAEEKITDAKGKSTSGSHVSEVVVSMDMRNDLKSCKGDNSKSLDSIAEVDSNSPPPSLLSVRETSLQSATQTPQQSYDQMSQLHPPPPSFFGQSRGSFITPSTHWNSVYPSIAIVGQNTGASPSPSLAPSIASGAITSKVSELHDAVSLPCPPPSLPPPPPPPPPPPPPPPPPPPPPHPMSSTIGAPLPPPSISPTSFKAPLLATPPPHPPSPPLSKSTRLPPPPPLSTAPPPPPPPLCRAPPPPPPLPPSSGAPPPPPPPSLSRAPPPPPPPTRGPPPPPMHGGTPPPPPPGGRGPPTGSLAPGAPAPFGPLGGAPSPSSHGTDPRGRGRGLARPTGAGAMAARRSSLKPLHWSKVTRALQGSLWDELQRRGEPQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRRSVGSKTDKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKEFLGKCEKYFLELMKVPRVESKFRVFSFKIQFGTQITEFKKSLNTVNFACEEVRNSFKLKEIMKKILYLGNTMNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVIVSVALNEDIIGGLPFCFFLFELQVLAERFPGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASKNDGPVSEVFRKTLKEFIAVSESEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTVTLLNFTRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGINLIRKSGKYEEEEEEES 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 609 675 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 720 925 - -
Pumo10g02193 1364 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Pumo10g02193 1364 SMART PTEN_C2_2 198 338 IPR014020 -
Pumo10g02193 1364 PRINTS Proline rich extensin signature 729 741 - -
Pumo10g02193 1364 PRINTS Proline rich extensin signature 792 813 - -
Pumo10g02193 1364 PRINTS Proline rich extensin signature 777 789 - -
Pumo10g02193 1364 PRINTS Proline rich extensin signature 743 759 - -
Pumo10g02193 1364 SUPERFAMILY Formin homology 2 domain (FH2 domain) 994 1345 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 478 571 - -
Pumo10g02193 1364 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Pumo10g02193 1364 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 728 892 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 617 675 - -
Pumo10g02193 1364 PANTHER FORMIN-J 1 771 - -
Pumo10g02193 1364 Coils Coil 475 495 - -
Pumo10g02193 1364 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Pumo10g02193 1364 SMART it6_source 742 1361 IPR015425 -
Pumo10g02193 1364 Gene3D - 203 336 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 537 571 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 519 533 - -
Pumo10g02193 1364 Coils Coil 1224 1248 - -
Pumo10g02193 1364 ProSiteProfiles Formin homology-2 (FH2) domain profile. 917 1343 IPR015425 -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 970 990 - -
Pumo10g02193 1364 MobiDBLite consensus disorder prediction 478 494 - -
Pumo10g02193 1364 Gene3D Protein tyrosine phosphatase superfamily 13 201 IPR029021 -
Pumo10g02193 1364 Gene3D Formin, FH2 domain 918 1329 IPR042201 -
Pumo10g02193 1364 Coils Coil 1318 1347 - -
Pumo10g02193 1364 Pfam Formin Homology 2 Domain 924 1317 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02193 Pumo-Chr10 29792572 29808365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02193 1 647 FH2 protein (formin) Gene Family AT5G07740 57.833 0.0 753