Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02191 ATGGCTTCATCTCTTTCCCCTTCTGCCTCTTCCCTCGATCAAACCCTTCGCGACGTCGACGACTTCGTTTTGGAAAATGGGTCAGAAGGTTTGTCATGGGACACACTTCATTATGTTTACCAGCTTGTGCAGAGTGGCAATGTGGCATTTCGAGAGAACAAAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAGTATTTCATGCACAGAACATCATCATCTTCAGAACGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAGTTCAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTACTGTTAGAGAAATATGAAAAAGCCCGTGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGTTTCGTCTAGTTCAACAGGGATGAGTACACATGGACATCCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGCCGTTCGTGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCTATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGCATGACGGTTTAATCAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCACTCAATATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGTATCATCCGTTCCTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCACCAGAAGGGACAAGTGAAAGAGAGACTTTACAGCAACAGACATATAGTGCAGCCGAAGATGCTCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAAACTTGAGAGACTCGCCAGTGTTGAAGTAATGATGCCCTCACCAAAAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACTCTCTCCAATCGGAGGCCTGCAGAAAGATTGGATCTCCTACGCATAAGAGACACTGCTGAGAGAATTAGACGGGGCCTGATATTTCTCCGGCAAGAGGAACAAGGTTGCAGAATTCAGTAA 1461 0.4278 MASSLSPSASSLDQTLRDVDDFVLENGSEGLSWDTLHYVYQLVQSGNVAFRENKMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFMHRTSSSSERRPLSGLEPTTLAELGLKDAEKLVELQSSSAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGHPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTSERETLQQQTYSAAEDARSWIARAKEAARHDQRKLERLASVEVMMPSPKDPERFSFWLATLSNRRPAERLDLLRIRDTAERIRRGLIFLRQEEQGCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02191 486 SMART lon_5 280 478 IPR003111 -
Pumo10g02191 486 SMART ring_2 197 234 IPR001841 -
Pumo10g02191 486 ProSiteProfiles Lon N-terminal domain profile. 278 478 IPR003111 -
Pumo10g02191 486 Gene3D - 279 380 IPR046336 -
Pumo10g02191 486 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Pumo10g02191 486 Gene3D Tetratricopeptide repeat domain 38 187 IPR011990 GO:0005515
Pumo10g02191 486 CDD RING-HC_LONFs_rpt2 194 238 - -
Pumo10g02191 486 PANTHER RING FINGER PROTEIN 127 31 479 - -
Pumo10g02191 486 SUPERFAMILY TPR-like 39 169 IPR011990 GO:0005515
Pumo10g02191 486 SUPERFAMILY PUA domain-like 281 476 IPR015947 -
Pumo10g02191 486 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Pumo10g02191 486 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Pumo10g02191 486 Gene3D - 412 478 - -
Pumo10g02191 486 SMART tpr_5 39 72 IPR019734 GO:0005515
Pumo10g02191 486 SMART tpr_5 130 163 IPR019734 GO:0005515
Pumo10g02191 486 SUPERFAMILY RING/U-box 191 260 - -
Pumo10g02191 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Pumo10g02191 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 477 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02191 Pumo-Chr10 29768521 29778916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02191 185 238 C3H Transcription Factor Family AT1G74990 35.088 3.43e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02191 - - gmx:100802277 883.634