Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02185 ATGGAGTCTGGTGAGGAGATTAATTTGAATATCGAAAGTGGTGGTGGGAATAATGGGAAGAGTGGTGATGGGTTCATTGATAGGAGTAAGGTGCGGATTTTGTTCTGCGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACGCTTCTTTTGAGGTGTTCTTATCAGGTTACCTCCGTAAAGTCAGCAAGACAGGTTATTGATGCACTGAATGCAGAGGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTGAAGTACATAACACGGGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACGTGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGATCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCGGGAATATCAGTCCAACAAGAGCTAGAGTCTACTATTGCAATTGCTGCTGCTGCTGTTGAGGAACCTCCAGATGCTCATGCGTCAGAACATGGGCCTGGTGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATGACCTTCAAATACGTGAAAATGGAGAGACATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAATAGTATACCTGATTCTTTCTCTATTGAGAGGTCTTGTACTCCCCCTGCATCAACGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTTACATCAGGGTCTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATCCTAATACAGCTATGATTGCACAGTACAGTCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGTATATGCTTACAACCTGGTCAGGTTCCTACACCTCATTCATGGCCATCGTTTGGAAGCGCAAGTTCATCAGAAGCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTCGTCAGAAAGTTGAACGGTGCTAACGTGGATCTTAATGGGCAGCCTGCATCAATGGACTATGATGAAGATGATGAAGATGACGAAAATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1689 0.4334 MESGEEINLNIESGGGNNGKSGDGFIDRSKVRILFCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYITRDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHVWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEAGISVQQELESTIAIAAAAVEEPPDAHASEHGPGVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGATHVRMEVMHQACAQQGVNDLQIRENGETCESQSQDDLPSSNSIPDSFSIERSCTPPASTEVSQQKHYREENLHQGLMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHPNTAMIAQYSHLPQGGPHGTGMTSFPYYPMSICLQPGQVPTPHSWPSFGSASSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGANVDLNGQPASMDYDEDDEDDENDQGARDSSPEDA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02185 562 FunFam Two-component response regulator-like APRR1 31 276 - -
Pumo10g02185 562 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Pumo10g02185 562 MobiDBLite consensus disorder prediction 224 254 - -
Pumo10g02185 562 MobiDBLite consensus disorder prediction 179 204 - -
Pumo10g02185 562 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 249 IPR045279 GO:0009736
Pumo10g02185 562 MobiDBLite consensus disorder prediction 528 562 - -
Pumo10g02185 562 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Pumo10g02185 562 Pfam CCT motif 482 524 IPR010402 GO:0005515
Pumo10g02185 562 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
Pumo10g02185 562 SMART REC_2 31 146 IPR001789 GO:0000160
Pumo10g02185 562 MobiDBLite consensus disorder prediction 538 554 - -
Pumo10g02185 562 Gene3D - 31 235 - -
Pumo10g02185 562 SUPERFAMILY CheY-like 27 157 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02185 Pumo-Chr10 29637959 29644198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02185 20 561 Response Regulator Gene Family AT5G61380 51.111 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pumo10g02185 Response_reg 5.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02185 K12127 - gmx:100799728 1015.37