Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02179 ATGGGAAGGACTCCTTGCTGCAGTCATGAGGAATTGAGAAAAGGGGCATGGACAGTTCAAGAAGACCAGAAACTAATTGCTTACATTCAGAAACATGGCACAGGAAGCTGGCGTACCTTGCCACAGAAAGCAGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCTGACATAAAGAGAGGGAAGTTAAGCCAAGAAGAAGAGCAGACAATTATAAAACTTCAGGCAGTTCTTGGCAACAGGTGGTCAAGTATTGCAAAGCACTTACCAATGAGAACTGATAATGAAATCAAGAACTATTGGAACTCATATCTGAAAAGGCAGTTTGAAAAGAATGTTGTGGATCCCTCGAGTCCAAAACCAATTAGCACTGATAGTTCCACAGAATCAAAATCCAGTGACATGTGCATGGTTCCATCAAAGAAAACTGATTGCCATGGACCAAACAGCACAACACACCAATCTCATCAGCACAGCTTATCAAAGTCAATGTCATCTTCCACTCATCTTCTCAACAGAGTTGCTAGTAAAATTGTGGCATCTGGGTACCTTGAAGCAATTAAATCATGCCAACCTGCTGTTGCTGGGAACAGCAAAAGTGAAAGTGTGGTTAAAACTGGAATTGGGCTACAAAAGGACAATATTAGAGACCCCATTGTGCCTAATTTGACCTCACCAAGACATTCAGTAACTTCTGCACAGTTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGGCCTTGAGGCTGCAAAAGCTGTATTCTCAAAACTGGTGGAAAGCAGTGAAAAAGGTGACACTGCTAGTGATGGTAGCTTTGTTGGCAGTGATCATCAAGTTGGAGGAGGTTGTTTAAATGCTTTAAGCCCTTTTGAGGATGGACCACACATAACCAAAATAATTGACTCCCCTTCTAGTCCTTCACTAGTGTTCAATCAAGTGACCACACCCTCTTGCTTTTCAGATAATGAAGATAATAACTGGCAATGTGTTTCATCTAACTATGTTTCCTTCAGATTTTGTGCTGCAAGTGGTGGTGATCACTGCAGTGTGTCTGAAATCAACTTGGGTGAGTCTTCTAGTTCCACATCATGCTTCCTGCTTGAGAATGCTGATCTTGGAAAGTGTGATGAGGAGATAAGCAAGTACATTCAGTATTTGTAG 1185 0.4194 MGRTPCCSHEELRKGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSQEEEQTIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRQFEKNVVDPSSPKPISTDSSTESKSSDMCMVPSKKTDCHGPNSTTHQSHQHSLSKSMSSSTHLLNRVASKIVASGYLEAIKSCQPAVAGNSKSESVVKTGIGLQKDNIRDPIVPNLTSPRHSVTSAQLLNKMATSLPHKGLEAAKAVFSKLVESSEKGDTASDGSFVGSDHQVGGGCLNALSPFEDGPHITKIIDSPSSPSLVFNQVTTPSCFSDNEDNNWQCVSSNYVSFRFCAASGGDHCSVSEINLGESSSSTSCFLLENADLGKCDEEISKYIQYL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02179 394 MobiDBLite consensus disorder prediction 151 173 - -
Pumo10g02179 394 MobiDBLite consensus disorder prediction 119 173 - -
Pumo10g02179 394 MobiDBLite consensus disorder prediction 124 144 - -
Pumo10g02179 394 CDD SANT 16 61 IPR001005 -
Pumo10g02179 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g02179 394 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo10g02179 394 FunFam MYB-related transcription factor 13 66 - -
Pumo10g02179 394 FunFam MYB transcription factor 69 140 - -
Pumo10g02179 394 Gene3D - 14 66 - -
Pumo10g02179 394 Gene3D - 69 143 - -
Pumo10g02179 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo10g02179 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 179 - -
Pumo10g02179 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo10g02179 394 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo10g02179 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo10g02179 394 CDD SANT 71 112 IPR001005 -
Pumo10g02179 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g02179 394 SMART sant 66 114 IPR001005 -
Pumo10g02179 394 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02179 Pumo-Chr10 29564674 29567172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02179 1 128 MYB Transcription Factor Family AT5G15310 69.531 4.47e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02179 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02179 K09422 - gmx:100818639 655.981