Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02178 ATGGAAAACGTTTCAGTTCTGTGCAAGGTAGAGGATCAGATGGATTTGCCTCCTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTTATTAGTCATTACCTTCACAGAAAGGTGAATGACACCAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTGAACAGGTCTGAGCCTTGGGAATTGCCATGGAAGGCCAAAATGGGAGAGAAACAGTGGTACTTTTTCTGTGTGAGGGACAGGAAATACCCAACTGGCTTGAGGACCAATAGGGCCACTGAATCAGGGTACTGGAAGGCCACTGGGAAAGACAGAGAGATTTTCAGAGGGAAATCCCTTGTGGGAATGAAGAAAACATTGGTTTTCTACAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAATATAGGCTTGATGGCAAATTCTCTGTTCACAATCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGTAGGGTGTTTCAGAAGAGTTCAGGTGTGAAGAAGACTCATATTTCTGGGATAATGATGTTGGACTCTTATGGAAACGAATTGGGTTCTTCTGCTTTGCCACCTCTCAATGATTCTTCACCTTCCATTGGCAACAACACCAAAGCACTGAGTGTGACTACTGAACCGGCTTACGTGCCCTGCTTCTCCAATCCAACAATTGATGTTCCAAGAGGGATCTTTGATTCCTTGAACAACATCAACATCAACAACAACAACAACAACAACACCCTTTATGGGGTTTCTTCAAACCATTCATTCTACTCCACTCAAGGGGTTCAACTTCAGGCTCCACCAACTTTGCCATTGCAAAGTTCTTCAAACCATTACCTTAGGGCCTTCCTTGACAACCATGGAAATAATGGATCAAACATGAGGACTGGTTTTGAGCCAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAAGTCTTTCCACTGATCATTTGAACGCTGAAATCTCTTCTGTTGTGTCAAATCTTGATATGGGTAAAAGGCACTTTGAGAATCAAAACAACCCAATTGCTTCAGCTGCAGTTGCACCAGTGGACTTTGCCACCTGGTGGAACTACTGA 1092 0.4441 MENVSVLCKVEDQMDLPPGFRFHPTDEELISHYLHRKVNDTNFSARAIGEVDLNRSEPWELPWKAKMGEKQWYFFCVRDRKYPTGLRTNRATESGYWKATGKDREIFRGKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRLDGKFSVHNLPKTAKNEWVICRVFQKSSGVKKTHISGIMMLDSYGNELGSSALPPLNDSSPSIGNNTKALSVTTEPAYVPCFSNPTIDVPRGIFDSLNNININNNNNNNTLYGVSSNHSFYSTQGVQLQAPPTLPLQSSSNHYLRAFLDNHGNNGSNMRTGFEPEREMVSVSQETSLSTDHLNAEISSVVSNLDMGKRHFENQNNPIASAAVAPVDFATWWNY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02178 363 FunFam NAC domain-containing protein 100-like 25 170 - -
Pumo10g02178 363 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Pumo10g02178 363 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Pumo10g02178 363 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Pumo10g02178 363 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Pumo10g02178 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02178 Pumo-Chr10 29538694 29540659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02178 14 363 NAC Transcription Factor Family AT5G07680 56.583 3.49e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo10g02178 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02178 - - gmx:547650 609.757