Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02172 ATGGCCACCGTCACCACCCAAGCCTCCGCCGCGATTTTCCGGCCATGTGCTTCGAAATCGAGGTTTATGACCGGCTCTTCCGGTAAACTCAACCGGGAAGTGACTATGAGGCCAATGGGGTGCCCTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGCTACCTGGCTTGGCCTCCCCAGCTTACCTCAATGGCACTCTTCCTGGTGACAATGGGTTTGACCCTCTGGGGCTTGCTGAGGACCCAGAGAACTTGAGGTGGTATGTTCAAGCAGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAATTTGGAATCATCAATGCCCCTCAGTGGTATGATGCTGGGAAATCAGAGTACTTTGCATCATCCTCAACCCTCTTTGTGATTGAGTTCATCTTGTTCCACTATGTGGAGATCAGAAGATGGCAGGACATTAAGAACCCTGGTTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCAACATGAGTGTGGATACCCTGGCAGTGTGTTTAACCCCTTGAACTTTGCACCAACTTTGGAGGCCAAGGAAAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGCAAAGGACCATTTGAGAACCTCTTGCAGCACATCTCTGACCCATGGCACAACACCATCATCAATACAATTCGTGGCTACTAA 759 0.4993 MATVTTQASAAIFRPCASKSRFMTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPAYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPQHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIINTIRGY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02172 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Pumo10g02172 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Pumo10g02172 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Pumo10g02172 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Pumo10g02172 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 17 248 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02172 Pumo-Chr10 29430223 29433646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02172 43 245 Chloroplast and Mitochondria Gene Families AT3G61470 50.943 1.42e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02172 K08910 - gmx:100802922 519.62