Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02170 ATGCTGGAAAATAAGGATCCCGCAATTAAGCTCTTCGGCCAGAAGATTCCCTTCCCCGGAGAAGCCGACGCTCCGGCCATTGCCGCCGGCGAAACTGCCTCTCCGCCGGCGATGGATGTCGACAAGGACGAAGAAGACCTTGGTGAGTCAGAGACTGAAGATGAGAAAGACAAGGATCCTCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTGCTCCAAATGGTGCAGACTCTAAGAAGACCCCTGAGGGTATTATTCAGAACCCAGACACACCTTCCATAGAGGAAGAATCTGCAAAGTCAATAACCGACAAGTCAGACAACGATCAAAAACATAACAACAACTCGCAGGAGAACAACAAAACACTGAAGAAGCCGGACAAAATACTCCCGTGTCCGCGCTGCAACAGCATGGACACGAAGTTCTGCTACTACAACAACTACAACGTCAACCAGCCACGCTATTTCTGCAAGGCGTGTCAAAGATACTGGACTGCTGGTGGCACCATGCGGAACGTGCCGGTGGGAGCGGGGAGAAGAAAGAACAAGAACTCGGCCTCACACTACCGCCACATCACAATCTCTGAAGCTCTTCAGGCAGCCAGAATCGATGCCCCGAACTGGGACTCATCTTTTGAAAACAAATGGGAGAGTCCTCAGCTTCGGATTAGACCCTCCAATTTGTGA 696 0.5043 MLENKDPAIKLFGQKIPFPGEADAPAIAAGETASPPAMDVDKDEEDLGESETEDEKDKDPRAEKVSEKTKEADPAPNGADSKKTPEGIIQNPDTPSIEEESAKSITDKSDNDQKHNNNSQENNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAPNWDSSFENKWESPQLRIRPSNL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02170 231 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
Pumo10g02170 231 MobiDBLite consensus disorder prediction 54 77 - -
Pumo10g02170 231 PANTHER CYCLIC DOF FACTOR 2 4 209 IPR045174 GO:0003700|GO:0006355
Pumo10g02170 231 Pfam Dof domain, zinc finger 130 187 IPR003851 GO:0003677|GO:0006355
Pumo10g02170 231 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Pumo10g02170 231 MobiDBLite consensus disorder prediction 100 117 - -
Pumo10g02170 231 MobiDBLite consensus disorder prediction 13 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02170 Pumo-Chr10 29413062 29414950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02170 1 207 C2C2-Dof Transcription Factor Family AT3G47500 52.657 1.97e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g02170 zf-Dof 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02170 - - gmx:100798021 356.295