Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02161 ATGAAGAAGAGACAGGTGGTGGTGAAAAGTGTGGCCAACACTTCATCTTCAGTGATGAGAAACATAAGATATGGTGAGTGCCAGAAGAATCATGCAGCCAATATTGGAGGGTATGCTGTTGATGGCTGCAGGGAATTCATGGCTAGTACAGGGGAAGCTGGTGGGGCACTTACATGTGCAGCTTGTGGCTGCCACAGGAACTTCCACAGAAGGGAAGTGCAAACTGAGGTAGTTTGTGAGTACTCTCCTCCTAATTCTGCTCGCTAA 267 0.4794 MKKRQVVVKSVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEAGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02161 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 76 - -
Pumo10g02161 88 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 73 IPR006456 -
Pumo10g02161 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 72 IPR006456 -
Pumo10g02161 88 Pfam ZF-HD protein dimerisation region 22 73 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02161 Pumo-Chr10 29315189 29316246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02161 1 86 Zinc finger-homeobox gene family AT1G18835 76.136 1.06e-41 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo10g02161 ZF-HD_dimer 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02161 - - gmx:100794835 171.014