Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02160 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATGTTGGTCTCTTACATTCAAGAACAAGGACCCGGGAATTGGAGATCAGTTCCCACTAATACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACCAACTATCTCCGACCGGGTATCAAACGAGGCAATTTCACCGATCATGAAGAAAAAATGATAATCCACCTCCAAGCACTTTTGGGTAACAGATGGGCTGCTATAGCTTCCTACCTTCCACAAAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAGAAGAAGCTGAAGAAGATGCAAACTGGTGGAGGTGATGATGGTAATAATAACAATGATGATGATAAAGGAAACTCTTGTTCACAAATAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGATATCCACCTGGCCAAACAAGCCTTATGTGAGGCCCTATCACTTGACAAACCAACCCAAATTTTCCCAGAAGAGACCAAATTACCCTCCACTTCTCCCCACCAGACACCAAACCAAACATCCTTTTACGCATCAAACACAGATAACATAGCCAGGTTGTTGGAGAATTGGATGAACAAATCCCCAAACATGACAACAACAGAAACAAAACCCTTCAGCAACAACATGGTGATAACCACAGGGTCTAGTTCAAGCGAGGGAACAACACAAAGCTCCATCACATGCACACAGGACCATGCTCTTGACTCCTTGTGGAGCTTCAACTCTGAACGCTCTTCTCAATCTGAAGAAAACAACACCAACTTATTGGGTGAGAGCAAGCCACACCACCAAGAAACTCAAGTCCCTATCATGCTGCTGGAGAATTGGCTCTTTGATGATGCTGCACCTCAGTGCAATGAAGATCTTATGAACATGTCACTGGAGGAAAGTACAGAAGGGTTGTTCTAG 966 0.442 MGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEQGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQTGGGDDGNNNNDDDKGNSCSQIKGQWERRLQTDIHLAKQALCEALSLDKPTQIFPEETKLPSTSPHQTPNQTSFYASNTDNIARLLENWMNKSPNMTTTETKPFSNNMVITTGSSSSEGTTQSSITCTQDHALDSLWSFNSERSSQSEENNTNLLGESKPHHQETQVPIMLLENWLFDDAAPQCNEDLMNMSLEESTEGLF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02160 321 CDD SANT 69 112 IPR001005 -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 123 140 - -
Pumo10g02160 321 SMART sant 66 114 IPR001005 -
Pumo10g02160 321 SMART sant 13 63 IPR001005 -
Pumo10g02160 321 CDD SANT 16 61 IPR001005 -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 261 282 - -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 118 140 - -
Pumo10g02160 321 Gene3D - 69 138 - -
Pumo10g02160 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g02160 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g02160 321 FunFam Transcription factor MYB30 68 126 - -
Pumo10g02160 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 261 280 - -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 176 194 - -
Pumo10g02160 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Pumo10g02160 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo10g02160 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo10g02160 321 FunFam MYB-related transcription factor 13 66 - -
Pumo10g02160 321 Gene3D - 13 66 - -
Pumo10g02160 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo10g02160 321 MobiDBLite consensus disorder prediction 175 194 - -
Pumo10g02160 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02160 Pumo-Chr10 29269459 29271270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02160 1 321 MYB Transcription Factor Family AT5G62470 49.864 1.37e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02160 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02160 K09422 - gmx:100807020 538.495