Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02153 ATGGAGGGAGGTGATGACTTCCACCACCACCATCACCATCACCACCACCACCACCGACAAAACTTCCCATTCCAACTCCTTGAGAAGAAAGAAGACCAAGACCCCCCTTCTTGCTCCACCTCAATATCATCCCCATACCCTTCCCTAGCCATCTCAGCCGAACCCTCCACCACCTCCAATTCCCAACTCCTCCCCACCACACCCTCCGAGCCCTCCCCCAAAAAACCACCCCCCAAGAGAACCTCCACCAAGGACCGGCACACCAAAGTCGACGGCCGCGGCCGTCGAATCCGAATGCCGGCCCTCTGCGCTGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACACAAGTCTGACGGCGAGACCATCGAGTGGCTGCTCCAGCAGGCGGAGCCATCCGTCATCGCCGCCACCGGTACCGGCACCATCCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGATCCAACTACTTCAACTCCAACTTCTCCCTCCAACCCCGGAGAAGCCTCTTCTTAGAAAACACCAACACCAACAACAACAACACTTCCACAACCACCCTCCTCAATTTCCAATCCAACAACCCCATCTCCACCCCCATCTTCCAACCCAAGCACGAATTGCGCGAATCCTCATCCCTAGACTTGTCCTCAGACAACAACGAAGAGGGTTTGGGAAGAAAAAGAAGACCCTTAGAGCAAGACCTATCCTCCACTATGCAACACCAAGTTGGAAGCTATTTGATGCAATCAAGCACCTCAGGTACAATTCCTTCTAGCCACGCTCAAATTCCAGCGAATATATGGATGGTGGCGAATTCAAATAACCACCAAGGTGTGGGTGTGAGTGGTGGTGAAGCTCCTTTGTGGACATTCCCAGCTGGTATGAGTAACAGTGCTTTGTATAGAGGAACCATGTCAAGTGGGTTGCATTTCATGAACTTTCCAACCCCAATGGCCCTCTTGCCAGGTCAGCAATTAGGGTCTTCTGGGATTGGTGGGAACATCAACGAAGGGCATTTGAGCATGCTCTCGGGGCTCAACCCTTATCGGACGGTGATCGGCGTTTCCGAGTCTCAGGCGAGTGAGTCACACTCACACTCACATCATGGTGGAAGCGAGGATCGGCATGAATAA 1176 0.5442 MEGGDDFHHHHHHHHHHHRQNFPFQLLEKKEDQDPPSCSTSISSPYPSLAISAEPSTTSNSQLLPTTPSEPSPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLENTNTNNNNTSTTTLLNFQSNNPISTPIFQPKHELRESSSLDLSSDNNEEGLGRKRRPLEQDLSSTMQHQVGSYLMQSSTSGTIPSSHAQIPANIWMVANSNNHQGVGVSGGEAPLWTFPAGMSNSALYRGTMSSGLHFMNFPTPMALLPGQQLGSSGIGGNINEGHLSMLSGLNPYRTVIGVSESQASESHSHSHHGGSEDRHE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02153 391 MobiDBLite consensus disorder prediction 371 391 - -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 219 253 - -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 234 248 - -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 21 35 - -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 77 96 - -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 1 96 - -
Pumo10g02153 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 387 IPR005333 GO:0003700
Pumo10g02153 391 MobiDBLite consensus disorder prediction 36 68 - -
Pumo10g02153 391 ProSiteProfiles TCP domain profile. 83 137 IPR017887 -
Pumo10g02153 391 Pfam TCP family transcription factor 81 243 IPR017887 -
Pumo10g02153 391 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02153 Pumo-Chr10 29142743 29144428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02153 58 339 TCP Transcription Factor Family AT3G47620 45.217 2.28e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo10g02153 TCP 6.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02153 - - gmx:100792383 511.146