Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02151 ATGGGGTCGGAGACTCTTGCCCCTGTAGTTGACAAGGTCAACACGTCAGAAGAGACACCAAGAAAGAGGTCTTGTCCCGGTAAAAGGAACCAAGGGAAAGTCCCTAAGAGAGTTCACAAGGCTGAAAGAGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGGTCTTGCCGATGCACTTGACCTTAATGAACAGAGCAATGGAAAAGCTTCTATATTGAGGGAAGCCACCAGATTGCTGAAAGATTTGCTCAGTCAGATCGAGTCTTTGAAAAAGGACAGTGCATCTTTGTTGTCAGAAACACATTATGTGACTATGGAGAAGAATGAGGTGGTGGAGGAGAATTCTTCCCTAAAAACTCAAATTGAGAAGCTTCAAGGTGAGATAAAAGCAAGAGTAGCCCAATCTAGATCTGACCTGAATGCACCTCCTCATTTGGAACTTCAGCAACAAGAAAAGGCAACAAAGTTTACAGGAGAGAGTCTCCAATTGTCTACCACAGAACCTGCATTGCAGCAAGGACATGCAGTTTTGCTTGTCCCCTTAAGTCATCATCACCAAGATGCTTTATCAGCTCATAATGTTGCAGAGGTGACCCCAAAACCCACCTCCACTATCAGTAAACCACATGCCAGGTATCCCACCCCAATGGATTCATGGCCATTGCAGCTGCTTGCAGAGCAACCAACTTCAAGTTAA 705 0.444 MGSETLAPVVDKVNTSEETPRKRSCPGKRNQGKVPKRVHKAEREKMKREHLNELFLGLADALDLNEQSNGKASILREATRLLKDLLSQIESLKKDSASLLSETHYVTMEKNEVVEENSSLKTQIEKLQGEIKARVAQSRSDLNAPPHLELQQQEKATKFTGESLQLSTTEPALQQGHAVLLVPLSHHHQDALSAHNVAEVTPKPTSTISKPHARYPTPMDSWPLQLLAEQPTSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02151 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 85 IPR011598 GO:0046983
Pumo10g02151 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 99 IPR036638 GO:0046983
Pumo10g02151 234 MobiDBLite consensus disorder prediction 1 45 - -
Pumo10g02151 234 Pfam Helix-loop-helix DNA-binding domain 36 85 IPR011598 GO:0046983
Pumo10g02151 234 Coils Coil 110 130 - -
Pumo10g02151 234 Gene3D - 32 112 IPR036638 GO:0046983
Pumo10g02151 234 Coils Coil 75 102 - -
Pumo10g02151 234 MobiDBLite consensus disorder prediction 197 234 - -
Pumo10g02151 234 PANTHER TRANSCRIPTION FACTOR BHLH47 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02151 Pumo-Chr10 29096292 29098694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02151 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 44.622 9.68e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02151 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02151 - - mtr:11438092 294.664